Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 333 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component (from data) from Phaeobacter inhibens DSM 17395

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 65/315 (20%), Positives = 131/315 (41%), Gaps = 4/315 (1%)

Query: 13  SSALSLAAATTGGFSPYAFAQEKTVALRLSSSHVADLNSSHFAWSQLMQANLKKAVGEQI 72
           ++A +  A T    +  A   +  + ++ S     D +    A S L++  + + +   +
Sbjct: 5   TAAATAVALTMSAGTAMAACDDGEIVVKFSHVTNTDKHPKGIAAS-LLEKRINEEMNGTM 63

Query: 73  RIDYFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDLGYLFDSYDHVARA 132
            ++ +PN+ L  ++ V++ +  G + +     S +   T Q  + DL ++F + D V   
Sbjct: 64  CLEVYPNSTLYNDNKVLEAMLQGDVQLAAPSLSKFEKFTKQFRLFDLPFMFKNIDAVDAF 123

Query: 133 IDAGVGAKLNDMLARSTGCQIITWGAHYGARNVYTKQPVKSLADIRNVKLRVLPTPAFIE 192
             +  G  + D + R     +  W  H G + +   +P+ + +D   +K RV  +   + 
Sbjct: 124 QGSENGQAMLDSMQRRGLQGLSYW--HNGMKQMSANKPLINPSDANGLKFRVQSSDVLVA 181

Query: 193 TFKIMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNEVVKHCWMTEHLFSPMVC 252
             + +G  P  ++F E+Y A Q GVVDG E+    +   K  EV      T H     + 
Sbjct: 182 QMEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNIYGKKFFEVQDGVTETNHGALDYLV 241

Query: 253 VAGKRAMDRVPAALRPAFLKAAADSTLQQRQIGNERSQQAIDDLKKTGITFTPMAKSERD 312
           V     +D +  A+R  FL    + T  +     + + +A   +   G     +   +R 
Sbjct: 242 VTSVDWLDSLDPAVREQFLTILGEVTATRNSESTKVNAEARQSIIDAGGVVRELTPEQRA 301

Query: 313 QVRKEMETKLWAGFA 327
              + M+  +W  FA
Sbjct: 302 AWVEAMK-PVWEQFA 315