Pairwise Alignments

Query, 331 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 2e-50
 Identities = 113/299 (37%), Positives = 162/299 (54%), Gaps = 17/299 (5%)

Query: 11  ARRLPPLLSLRAFEAAAAHLSFQRAALELSVTPSAISHQVRALEDTLGQPLFRRLTRQLA 70
           +RRLPPL +++AFEAAA HLSF RAA EL VT +A+SHQ++ALE+ LG  LFRR  R L 
Sbjct: 2   SRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLL 61

Query: 71  LTPAGQRLFDDLRMGFDVLEAGIDKLRRPAASQQVTLTTNTAFAARWVLPRMAAFRKACP 130
           LT  GQ  F D++  F  L    D+L   +A   +T++T+ +FA +W++PR+A F +  P
Sbjct: 62  LTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNP 121

Query: 131 GIELRLHASDTLVDLARGDADIAVRSGSGNWPGLTAHELMPERYAPMCSPML-----RLE 185
            I++R+ A D        D D+A+  G GNWPGL A +L  E   P+CSPML      L 
Sbjct: 122 DIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLS 181

Query: 186 RVADLPKQQLIHCSWQPHALAPALWPRWFKEAGVAPRHGRSTKAPSGLSFSDETHAMLAA 245
           + +DL    L+H S +        W  WF++ G+            G  FS  +  + AA
Sbjct: 182 QPSDLKHHTLLHDSSRHD------WQAWFRQCGI-----NDINVNQGPIFSHSSLVLQAA 230

Query: 246 LGGHGVALLSLTLSAEELRNGALVRPFGPAL-DTGSYFLATANGREHEPAVRAVWEWIV 303
             G GVAL    L+  +++ G LV PF   L    +Y+L           + A  +W++
Sbjct: 231 AHGQGVALGYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWML 289