Pairwise Alignments

Query, 466 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  241 bits (615), Expect = 5e-68
 Identities = 157/397 (39%), Positives = 218/397 (54%), Gaps = 7/397 (1%)

Query: 34  ARAGKRLAAVCYLDVDRFAELNDRLGMVAGNAALEEVARRIKAQLPRESVMARVGGDEFA 93
           A+  KR  A+  LD+D F  +ND LG   G+  L+ VA R +        +AR+GGDEFA
Sbjct: 233 AQLHKRGCALLLLDLDHFKNINDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFA 292

Query: 94  AVFAGLGT-SQCAQVLERIQNALAEPWTWRDQTASIDASIGAMMLDSNGPPPEIALRQAQ 152
            +        Q A +  RI +AL EP  + D    I+ASIG  +   +       LR A 
Sbjct: 293 VLVENCSQPGQAAALARRILDALKEPLRFDDHALFINASIGISLFPGDALSAGQLLRNAD 352

Query: 153 HAAFFAKRAA-DGKVHYFDAPQARADEQVVRERQRIQEGLLQGEFFLVYQPKVDMRRGEV 211
            A F AK A  DG   Y +   A A +Q V     ++  L Q E  + YQP  D+    +
Sbjct: 353 SALFKAKSAGRDGYALYTEELTAHA-QQRVEIAFELRRALQQQELRVHYQPVHDLATSRL 411

Query: 212 VGVEALIRWQHPERGLLPPIQFVPLIEDDALVEQVGDWAIATALWQAHQWRLAGLQVS-V 270
           +GVEAL+RW+HP RGL+ P +F+P+ E   L+ QV  W +  A  Q  QW+ AG+ +S V
Sbjct: 412 IGVEALVRWEHPTRGLVSPAEFIPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALSFV 471

Query: 271 SVNVAPRHMMRWDFVDRLARHLSQFPKLGAGMLELEILETTAISQFANVALF-VEACKAL 329
           +VNV+ R   R +  D++A+ L     L  G LELE+ E+ A+     VAL  +   + L
Sbjct: 472 AVNVSSRLFARRELYDQVAQVLHD-TGLDPGCLELEVTES-AVMDDPEVALEQMHRLREL 529

Query: 330 GVGVTIDDFGTGYSSLTYLRQLPVSAVKIDQSFVRGMLDNAQDRAIVQGILALLHALGLT 389
           GV + IDDFGTGYSSL  L++LPV  +KIDQ FV G+  +  D AIV+ I+AL H++G+ 
Sbjct: 530 GVRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQ 589

Query: 390 AVAEGVETVKQGEALLAMGCTLAQGYGIAMPMAAKDI 426
             AEG+E  +Q   LL   C L QGY    P+AA  +
Sbjct: 590 VHAEGIEQREQAAFLLGQACELGQGYWFGRPVAAAQL 626