Pairwise Alignments

Query, 466 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  230 bits (587), Expect = 1e-64
 Identities = 140/424 (33%), Positives = 222/424 (52%), Gaps = 9/424 (2%)

Query: 12  SHYDGSARLPPDEVLRPLMDD---WARAGKRLAAVCYLDVDRFAELNDRLGMVAGNAALE 68
           ++YD    L    +L   + D    A+       + YLD+DRF  +ND LG   G+  ++
Sbjct: 242 AYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLIK 301

Query: 69  EVARRIKAQLPRESVMARVGGDEFAAVFAGLGTSQCAQVLERIQNALAEPWTWRDQTASI 128
            VA R++A    + + AR+GGDEFA +   L  ++  +V +++   ++ P+   D     
Sbjct: 302 AVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKAEEVAKQLLTLISNPYAVDDHQFYC 361

Query: 129 DASIGAMMLDSNGPPPEIALRQAQHAAFFAKRAADGKVHYFDAPQARADEQVVRERQRIQ 188
             SIG  +  S G      LRQA  A + AK +   K  +++       E  +   + + 
Sbjct: 362 TVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLH 421

Query: 189 EGLLQGEFFLVYQPKVDMRRGEVVGVEALIRWQHPERGLLPPIQFVPLIEDDALVEQVGD 248
           E L Q +  L YQP+VD +   ++GVEALIRW HP+RGLLPP  F+P+ E+   +  +G+
Sbjct: 422 EALNQRQLELFYQPQVDEQHN-IIGVEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGN 480

Query: 249 WAIATALWQAHQWRLAGLQVS----VSVNVAPRHMMRWDFVDRLARHLSQFPKLGAGMLE 304
           W I  A +Q  QW+  G+       +++N++P    +  F++++   L Q    G   +E
Sbjct: 481 WIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQVNHALRQAGITGEP-IE 539

Query: 305 LEILETTAISQFANVALFVEACKALGVGVTIDDFGTGYSSLTYLRQLPVSAVKIDQSFVR 364
           LEI E+  +    +    +   K   + ++IDDFGTGYSSL YL+ L V  +KID+SFV 
Sbjct: 540 LEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVN 599

Query: 365 GMLDNAQDRAIVQGILALLHALGLTAVAEGVETVKQGEALLAMGCTLAQGYGIAMPMAAK 424
            +  +  D+AIV  ILA+   L L  +AEGVE   +  AL  +GC   QGY    P+ A+
Sbjct: 600 QLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDKPLRAE 659

Query: 425 DIVK 428
           +I +
Sbjct: 660 EIAQ 663