Pairwise Alignments

Query, 466 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (603), Expect = 2e-66
 Identities = 138/417 (33%), Positives = 228/417 (54%), Gaps = 8/417 (1%)

Query: 12   SHYDGSARLPPDEVLRPLMD---DWARAGKRLAAVCYLDVDRFAELNDRLGMVAGNAALE 68
            +H+D    LP  ++    +      A+   R  A+  +D+D+F  +ND  G   G+  L+
Sbjct: 633  AHFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQ 692

Query: 69   EVARRIKAQLPRESVMARVGGDEFAAVFAGLGTSQCA--QVLERIQNALAEPWTWRDQTA 126
            +VA+R++    +  ++AR+GGDEF  +   + T++ A   +  RI   L+ P+   ++  
Sbjct: 693  DVAKRLENIAGKNDLIARIGGDEFVLILPRV-TNEFAIEHMASRIIETLSTPFNLNEREI 751

Query: 127  SIDASIGAMMLDSNGPPPEIALRQAQHAAFFAKRAADGKVHYFDAPQARADEQVVRERQR 186
             I AS G  +   +G       R  + A + AK A      YF +   +A    +   QR
Sbjct: 752  QISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811

Query: 187  IQEGLLQGEFFLVYQPKVDMRRGEVVGVEALIRWQHPERGLLPPIQFVPLIEDDALVEQV 246
            ++  + Q EF L YQP V+M+ G+V  VEALIRWQ P+ GL+PP QF+ + E+  L+E +
Sbjct: 812  LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871

Query: 247  GDWAIATALWQAHQWRLAGLQVSVSVNVAPRHMM--RWDFVDRLARHLSQFPKLGAGMLE 304
            G+W +  A+    QW+  GLQ++V++NV+ R  +  R    D++ +       +    + 
Sbjct: 872  GEWVLNQAMHDLRQWQQLGLQLNVAINVSSRQCVNARGMGFDQVLQECFNRHHINPRNVH 931

Query: 305  LEILETTAISQFANVALFVEACKALGVGVTIDDFGTGYSSLTYLRQLPVSAVKIDQSFVR 364
            +EI E+  +   ++    +EA + LG  + IDDFGTGYSSL+YL++ P+S +KID+SFV 
Sbjct: 932  IEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVE 991

Query: 365  GMLDNAQDRAIVQGILALLHALGLTAVAEGVETVKQGEALLAMGCTLAQGYGIAMPM 421
              L N  +  +V+ I+ +  +L +  VAEG+ET  Q   L  +GC  AQGY I+ P+
Sbjct: 992  NALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKPL 1048