Pairwise Alignments

Query, 351 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 365 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  273 bits (698), Expect = 5e-78
 Identities = 149/348 (42%), Positives = 214/348 (61%), Gaps = 7/348 (2%)

Query: 4   VAQGPIAW-RSELWGSPLRALATVLLLALLAWGGFHVVEWGVVHAVFRPDAEACRAVQHG 62
           ++ G + W R+ L+ S +  L T++ L LL      V+EW +  A +  +  A    + G
Sbjct: 15  ISIGALGWLRANLFSSWINTLLTLVGLYLLWLIVPPVLEWAIFKADWTGETRA-DCSREG 73

Query: 63  ACWGVVAEKWRPMLFGRFPYEEQWRPAVAV---VVLSAVTVLSAWPRSWRWWLAPLWIVA 119
           ACW  +  ++   ++G +P E +WR   A    ++ +A   L   P   R+ +  L +  
Sbjct: 74  ACWVFIQTRFGQFMYGFYPTELRWRVDAAAWLAIIGAAPLFLRQMPHKLRYGIGYLLVYP 133

Query: 120 LLLFVLLMRGGVLGLSGVPTSRWGGLPLTIGLAVVGLALAFPLALLLALGRRSGWPVVRT 179
           LL + LL  GG LGL  VPTS+WGGL LT+ +A VG+A A PL +LLALGRRS  P +R 
Sbjct: 134 LLAYWLL-HGGFLGLQTVPTSQWGGLMLTVVIAAVGIAGALPLGILLALGRRSDMPAIRV 192

Query: 180 LSASYIELVRGVPLISVLFMASFLLPLLWPAGWQPDVLVRVLAGLTLFVAAYLAEIIRGG 239
           L  ++IE  RGVPLI+VLFM+S +LPL  P G   D L+R +  +  F AAY+AE++RGG
Sbjct: 193 LCVTFIEFWRGVPLITVLFMSSVMLPLFLPEGMNLDKLLRAMLMVVFFEAAYIAEVVRGG 252

Query: 240 LQAVPRGQTEVAMALGFGRWPVQRDIVLPQALRLVVPALTNSVVGTLKDTSLVTVVGLFE 299
           LQA+P+GQ E A A+G G W     ++LPQAL+LV+P + N+ +   KDTSLV ++GLF+
Sbjct: 253 LQAIPKGQYEAAAAMGLGYWRSTLLVILPQALKLVIPGIVNTFIALFKDTSLVIIIGLFD 312

Query: 300 LTGALGLALGGDPTWRPFYLEGYLFIAAVYWVLCFGLSRYSVWLEKRL 347
              ++  A   DP W     EGY+F A VYW+ CFG+SRYS+ LE++L
Sbjct: 313 FLNSIKRAT-ADPAWLGMSTEGYVFAALVYWMFCFGMSRYSMRLERKL 359