Pairwise Alignments

Query, 351 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 230 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  117 bits (293), Expect = 3e-31
 Identities = 79/214 (36%), Positives = 110/214 (51%), Gaps = 14/214 (6%)

Query: 142 WGGLPLTIGLAVVGLALAFPLALLLALGRRSGWPVVRTLSASYIELVRGVPLISVLFMAS 201
           + G+  T+GL ++G      L   LA+ R S  PV+  L+  YI L+R +PL+ ++F   
Sbjct: 19  YDGMTFTLGLTLLGTLAGGLLGTALAMLRLSSLPVLPHLATLYINLMRSMPLVLLIFWVY 78

Query: 202 FLLPLL--WPAG----WQPDVLVRVLAGLTLFVAAYLAEIIRGGLQAVPRGQTEVAMALG 255
           F++P L  W  G     Q       L   TLF AAY AEI+R G+Q+V RGQT  A ALG
Sbjct: 79  FMVPYLGQWILGTDRPMQVGTFTSSLLTFTLFEAAYFAEIMRSGIQSVSRGQTAAAQALG 138

Query: 256 FGRWPVQRDIVLPQALRLVVPALTNSVVGTLKDTSLVTVVGLFELTGALGLALGGDPTWR 315
              +     +VLPQA R ++P L   V+   +DTSLV V+ + +  GA       D    
Sbjct: 139 LTYFQSMGHVVLPQAFRAMLPVLLTQVIVLFQDTSLVYVLSITDFLGAASKVAQRDGR-- 196

Query: 316 PFYLEGYLFIAAVYWVLCFGLSRYSVWLEKRLSA 349
              +E YLF A VY+ + F  S     L KR+ A
Sbjct: 197 --LVEMYLFAAVVYFAISFAAS----LLVKRIQA 224