Pairwise Alignments

Query, 385 a.a., Macrolide-specific efflux protein MacA from Variovorax sp. SCN45

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 67/387 (17%)

Query: 7   RRSRKYFIGILVLVVLGLVAFVGLS--------PARKPEYLTASVQRTDLE-NAVLAT-G 56
           RR     +G+++LVVL L  +   S         A KP    A  +  +    A L T G
Sbjct: 3   RRRMLIMLGVVLLVVLLLAGYKAFSIYQQIQMFSAPKPPVSVAVAKAIEQPWQARLPTVG 62

Query: 57  VLQALKQVEVGAQVSGQLKSLKVVLGQTVKKGDWLAEIDPVISQNTLAQEQAKLDNLQAQ 116
            L+AL+ V++  +++G ++ ++   GQ VK G  L ++D  +       E A L+  +A 
Sbjct: 63  SLKALQGVDLSLEIAGTVQKVQFQSGQKVKAGQPLLQLDSEV-------ESALLETAEAD 115

Query: 117 KLAKEVRIRQAQLSWTRQQEMLAQDAAAKQDMESADAELRALRADGVSLDAQIRQQRLAL 176
                  +  AQL + R ++++   A +K + +               L AQ+++ +  +
Sbjct: 116 -------LGLAQLDFGRGRQLVGSQAISKGEFDR--------------LSAQLKKNQATV 154

Query: 177 ASAQTNLSYTRIVAPIDGDVVSISTLEGQTVVASFQVPTLMKLADLSTMTVKAQVSEADV 236
              + +L+  +I+AP  G  + I  ++    +AS  V  +  L DLS++ V   V E  V
Sbjct: 155 NQLKASLAKKQILAPFSG-TIGIRQVDVGDYLASGTV--IATLQDLSSLYVDFYVPEQTV 211

Query: 237 VRVKAGQPVYFTILGDPDKRYYGTLRAVQPSPEKINNAVFFNALFDVPNPDRTLRVDMTA 296
            R+   QPV  ++   P + + GT+ A+ P  E     V   A   + NPD  L   M A
Sbjct: 212 PRLAVAQPVNVSVSAYPGQTFVGTISAINPKVEDSTRNVLVRA--TLANPDGKLLPGMFA 269

Query: 297 QVAIMLGEAKQALVVPLTAL-------------------GTRDKDGRQEVRVLKADQSVE 337
            + ++L +    +VVP +A+                   GT +KD + +  ++      E
Sbjct: 270 NLQVILPDVAAGIVVPESAVTYTLYGNSMYVVAQKKAADGTVEKDDKGQPVLI-----AE 324

Query: 338 KRMVRVGISNNFQAQVLEGLKEGDKVI 364
           +R V  G   + Q  V +G++ GD+V+
Sbjct: 325 RRFVETGERRDGQVLVTKGVQSGDQVV 351