Pairwise Alignments

Query, 243 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 365 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (279), Expect = 1e-29
 Identities = 54/195 (27%), Positives = 110/195 (56%), Gaps = 4/195 (2%)

Query: 25  GGAALTVLLSVGSAVASAVLGLAWGIGLASARGWARAVLTLALAFFRAIPVLMLIFWTYF 84
           GG  +T+++++   +AS  +G+A  +G  S     R++ T+ +  +R +P++ ++F    
Sbjct: 156 GGLLVTLIIALVGIIASLPIGVALALGRRSDMPIIRSLCTVYIEVWRGVPLITVLFMASV 215

Query: 85  LLPFAL--GISVPGVLSVMCALSLVGGAYLAHAVNAGIRGVGQGQWAAGLSLGLTRWGTL 142
           +LP  L  G  +  +L  +  + +   AY+A  +  G++ + +GQ+ A  +LGL+ W  +
Sbjct: 216 MLPLFLSQGSEIDKLLRALIGVVMFSAAYMAEVIRGGLQAIPKGQYEAADALGLSYWKKM 275

Query: 143 RFIVLPQALRMMLPSFVNQWVTLVKDSSLAYIVGVGELSFVASQVNA--RTMVYPAEIFM 200
             I+LPQAL++ +PS VN ++ L KD+SL  I+G+ ++  +    N     + +  E ++
Sbjct: 276 GLIILPQALKITIPSIVNTFIGLFKDTSLVLIIGMFDVLGIGQSANTDPNWLGFATESYV 335

Query: 201 LVGAIYWLLCTGLDR 215
            V  ++W+ C G+ R
Sbjct: 336 FVALVFWIFCFGMSR 350