Pairwise Alignments

Query, 243 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (249), Expect = 2e-26
 Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 43  VLGLAWGIGLASARGWARAVLT----LALAFFRAIPVLMLIFWTYFLLP--FALGISVPG 96
           V  L   + LA+ R +   VL     L ++FFR  P+L+ +F  Y+ LP  F L + +  
Sbjct: 31  VFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPLLVGLDA 90

Query: 97  VLSVMCALSLVGGAYLAHAVNAGIRGVGQGQWAAGLSLGLTRWGTLRFIVLPQALRMMLP 156
             + +  L+L   AY+A ++ A I G+ + Q  A LS+G+T    +R I+LPQA R+ LP
Sbjct: 91  FSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALP 150

Query: 157 SFVNQWVTLVKDSSLAYIVGVGELSFVASQVNARTMVYPAEIFMLVGAIYWLLCTGLDRL 216
           S +N ++ ++K +SLA+ +GV E+    +Q+ A +     E F+ V  IYW++   L RL
Sbjct: 151 SLMNYFIDMIKSTSLAFTLGVAEI-MAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRL 209

Query: 217 ANMAVRR 223
            + A ++
Sbjct: 210 QSWAEQK 216