Pairwise Alignments

Query, 243 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  102 bits (255), Expect = 5e-27
 Identities = 59/206 (28%), Positives = 122/206 (59%), Gaps = 16/206 (7%)

Query: 7   LWDSLPYLLWGAFPQGPLGGAALTVLLSVGSAVASAVLGLAWGIGLASARGWARAVLTLA 66
           ++D++P+++   F         +T+ +++ S + + ++ +   +G   A  +++ +  + 
Sbjct: 6   VFDNIPFIIDAVF---------VTLKITIMSFLLAVIIAVL--VGSTRAMNFSKTLDLVL 54

Query: 67  LAF---FRAIPVLMLIFWTYFLLPFALGISVPGVLSVMCALSLVGGAYLAHAVNAGIRGV 123
           +A+   FR  P+L+ +F+ Y+ LP ++GI++    + +  LSL GGAY++  + A I+ V
Sbjct: 55  MAYVEVFRGTPLLIQLFFIYYGLP-SIGITMSSTFAAVLGLSLNGGAYISEIIRAAIQSV 113

Query: 124 GQGQWAAGLSLGLTRWGTLRFIVLPQALRMMLPSFVNQWVTLVKDSSLAYIVGVGELSFV 183
             GQ+ A  SLG+ +  ++ +IVLPQA R+ +P  VN + +++K+SSL  ++ + EL+ +
Sbjct: 114 PVGQFEAAESLGMGKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRI 173

Query: 184 ASQVNARTMVYPAEIFMLVGAIYWLL 209
              +  RT   P EI++ +G IY +L
Sbjct: 174 GQLIYTRTS-RPFEIYLTIGLIYLIL 198