Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  128 bits (321), Expect = 1e-34
 Identities = 74/216 (34%), Positives = 122/216 (56%), Gaps = 16/216 (7%)

Query: 13  RYLGWLLDGWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLV 72
           +YLG       TTL ++      A +L +F+A  R    P L   +  Y+S FR TPLLV
Sbjct: 17  KYLG-------TTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLV 69

Query: 73  QLFFWYFGAPAVLPEAVREWVYAGHVLSFELLSALVGLTLYAAAYVGEDIRSGIRGVPAG 132
           QLF  Y+G P V P  V    ++         +A++GLTL+ AAY+ E IR+ I G+   
Sbjct: 70  QLFLLYYGLPQVFPLLVGLDAFS---------AAVIGLTLHFAAYMAESIRAAIIGIDRS 120

Query: 133 QALAASALGFTRAQVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVELSYASRQ 192
           Q  A+ ++G T +Q M +++LPQA R+ALP L+  +++++K+TSLA  +G+ E+   ++ 
Sbjct: 121 QMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM 180

Query: 193 VEAETFKTFQAFGFATLLYIATIGAIELLAAWTARR 228
             + +F+ F+AF    L+Y   +  +  L +W  ++
Sbjct: 181 EASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQK 216