Pairwise Alignments

Query, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  114 bits (284), Expect = 2e-30
 Identities = 66/214 (30%), Positives = 117/214 (54%), Gaps = 14/214 (6%)

Query: 17  WLLDGWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRAT-GAYVSLFRNTPLLVQLF 75
           +++D    TL ++++    A ++ V + + R+ +    L     AYV +FR TPLL+QLF
Sbjct: 12  FIIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLLIQLF 71

Query: 76  FWYFGAPAVLPEAVREWVYAGHVLSFELLSALVGLTLYAAAYVGEDIRSGIRGVPAGQAL 135
           F Y+G P++           G  +S    +A++GL+L   AY+ E IR+ I+ VP GQ  
Sbjct: 72  FIYYGLPSI-----------GITMS-STFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFE 119

Query: 136 AASALGFTRAQVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVELSYASRQVEA 195
           AA +LG  + + M  +VLPQA RI +PPL+  + +I+K +SL   + + EL+   + +  
Sbjct: 120 AAESLGMGKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRIGQLIYT 179

Query: 196 ETFKTFQAFGFATLLYIATIGAIELLAAWTARRQ 229
            T + F+ +    L+Y+  +  I  + +W   ++
Sbjct: 180 RTSRPFEIYLTIGLIYLILVSIIS-IGSWKIEKK 212