Pairwise Alignments

Query, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 265 a.a., ABC transporter periplasmic substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  112 bits (281), Expect = 6e-30
 Identities = 88/262 (33%), Positives = 126/262 (48%), Gaps = 13/262 (4%)

Query: 7   IVTSLALAIGSFTLGGAAWADRLDDVRKAGVLRVAAFDGNPPFGYIDPASKKQVGHDIDL 66
           +V  LA+ +G+ T    A A  LDD+     + +      PPFG  +   +   G D+D+
Sbjct: 12  LVGLLAITVGAAT----ASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPD-GLDVDV 66

Query: 67  ATEFAKSLGVKIELVPTNPANRIPLLTSGKVDVVFASFTITDERAKAVDFTTPYFLVGQQ 126
           A   AK LGV++ELVP    +RIP L +GKVD V ASF I  ERA +V F+ PY      
Sbjct: 67  AKLLAKDLGVELELVPVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSI 126

Query: 127 FLA-KKGVLKDAAQIKDIRIGTEKGTTMESNL-RKNYPDAKVVLYDDSPFALAALRNGNV 184
            +A K+  +K  A +   R+G  +GT  E  L   N    ++V +DD    L AL +G V
Sbjct: 127 IIAPKEATIKSLADLAGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQV 186

Query: 185 QAITNDGVKLTAQWNAIPDKEKYEIPPITVSKEYLGAAVPKGEARLLEALNTWLVDSEKN 244
            AI              PD+   E    T  + + G  + + +  LL  LNT L   +++
Sbjct: 187 DAIGTVNYIAAQLQERYPDRGFEE--KTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQS 244

Query: 245 GRALAIYDTWFGPNSKAPLPRL 266
           G   AIY+ W     K P+P L
Sbjct: 245 GELGAIYEKWM----KTPIPEL 262