Pairwise Alignments

Query, 613 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase from Variovorax sp. SCN45

Subject, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

 Score =  241 bits (615), Expect = 7e-68
 Identities = 198/661 (29%), Positives = 301/661 (45%), Gaps = 70/661 (10%)

Query: 8   WRADGVPRSERFDDIYHTETGALAQSRHVFLGGCGLPEAWAGQPQ--WLILETGFGLGLN 65
           W   G P S++FDD+Y +    LA++R+VFL    LP+ W    Q  ++I ETGFG GLN
Sbjct: 14  WNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHNDDQRRFVIAETGFGTGLN 73

Query: 66  FLTTWQAW----RADPE-RPRMLHFVSVEAHPVAPGDLLRGAGAYPELAALAGELAAQWH 120
           FL  WQA+     A+P+ + + LHF+S E +P++  DL++   A+PELA  A +L   + 
Sbjct: 74  FLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFAQKLHKHYP 133

Query: 121 GLLPGFHRLSFDDGRVLLTLCIGDVQPML----RAQRFEADSIFLDGFSPQQNPDMWSAD 176
             +P   R+  +DG V L L  GD++  L      ++   D+ FLDGF+P +NP+MW+ +
Sbjct: 134 LAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSKNPEMWNQN 193

Query: 177 TLKAVSRFARQGTRIATWTIARAIRDALQQYGFAVEKYKGLPPKRDCLRGVFAP--AWTV 234
               +++ A+ G   AT+T A  +R  L   GFA++K KG   KR+ + G  +    +T 
Sbjct: 194 LFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAGSLSEKVPYTN 253

Query: 235 RRREPPPERIDAPGHCAVIGAGLAGAAVAASLARRGWRVTVLDAADWPASGASGLPVGML 294
              E   E        A+IG G+A A +A +LARRG  VT+  A + PA GASG   G +
Sbjct: 254 IAPEFRFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAV 313

Query: 295 APHVSPDDALLSRLTRAGIRVTWTELERLLED---GRDW----------RASGVLERRPD 341
            P +S D   +SR+           +E+  E      DW          +A+  L+   +
Sbjct: 314 YPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDEKATDKLKSMLE 373

Query: 342 GDVRVPAGWGASGPNESWPASAGQLASTGLPGDTPALWHSRAAWVRPHRL---IAAWLRQ 398
           G+       G S    +           G+P D  ++ +    W+ P  L   +   L Q
Sbjct: 374 GNFPTQLVHGLSAEQTN--------QQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQ 425

Query: 399 PG---VEFRGGCRVARVELEPGGWQLLDPAGQSLAEADRVVICAGHESGRFAPA--LPLQ 453
            G     ++        + E   WQL   +G +L     VVI +GH+    +    LPL 
Sbjct: 426 QGKLTAHYQTPIDALTWQPETQLWQL--RSGDTLMSHQCVVIASGHQFDSLSQTAELPLG 483

Query: 454 PVRGQVAWGAMPGSTALPPTPINGDGHLIAHVPDGPGTQIWLAGATFDRDSTDLAPTATD 513
            V+GQV+      + +   + +  DG++    P          GA++DR   D       
Sbjct: 484 KVKGQVSHIPTTETLSKINSVLCYDGYM---TPVSQQNGYHCIGASYDRQHLDATFDPQA 540

Query: 514 ADANRERLARLHPASAAALAPSFSSGDVESWVGIRCASGDRRPLVGPLEGSA-------- 565
              N ++L    P     L    S    +S  G+RC S D  P VG +   +        
Sbjct: 541 QHENAQKLIHCLPEQTWPLEVDVSGN--QSRQGVRCVSRDHLPFVGNVGEFSKITEQYRD 598

Query: 566 -------------TGLWACTALGSRGLSFAALCAELLAAQWHAEPLPLPATLAKALGTQR 612
                          L+A   LGSRGLS A L AELLA+Q   +P+PL   L + L   R
Sbjct: 599 LAQQHQAEPIALYPQLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPSR 658

Query: 613 L 613
           +
Sbjct: 659 M 659