Pairwise Alignments

Query, 401 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Variovorax sp. SCN45

Subject, 316 a.a., D-alanyl-D-alanine endopeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  210 bits (535), Expect = 4e-59
 Identities = 113/252 (44%), Positives = 162/252 (64%), Gaps = 2/252 (0%)

Query: 130 AGLHGTEDSLDLKSSVALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEAHLPNEE 189
           AG+  T    +L ++ ALVID  T+E+++S N  AV PIAS+TKLMT ++  +A LP + 
Sbjct: 34  AGVKKTVKKQELSANSALVIDLKTNEIIYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDA 93

Query: 190 LITITQDDVDTEKRSSSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSI 249
            + IT  D    K   SR+ +G+ +SR ++L L LMSSENRAA +L   YPGG   F+  
Sbjct: 94  KLPITIKDAKEMKGVHSRVKIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKA 153

Query: 250 MNAKAKMLGMKDTRYVEPTGLSSRNQSSAQDLALLVNAAYSDATVRSLSTSPEYQVEVG- 308
           MNAKAK LGMK+TR+VEPTGLS++N S+A+DL +L+ A+     +  LS + +  V    
Sbjct: 154 MNAKAKALGMKNTRFVEPTGLSAKNVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSK 213

Query: 309 -NRMLQFNTTNRLVKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSR 367
               L F  TNRLV + +W+I + KTG+ + AG CLVM+ ++  R++  V LD+ GK S 
Sbjct: 214 PRYTLDFRNTNRLVHNDNWKIDLTKTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSP 273

Query: 368 IADAERVRRWVE 379
           + DA R+R W+E
Sbjct: 274 VGDANRLRTWIE 285