Pairwise Alignments

Query, 401 a.a., Murein-DD-endopeptidase (EC 3.4.99.-) from Variovorax sp. SCN45

Subject, 389 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

 Score = 76.3 bits (186), Expect = 1e-18
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 12/236 (5%)

Query: 147 LVIDQDTHEVLFSKNDHAVLPIASLTKLMT----GLLISEAHLPNEELITITQDDVDTEK 202
           ++ID  T +VL   N H  L  ASLTKLMT    G  +   ++  ++ + I+ +    + 
Sbjct: 41  VLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKF 100

Query: 203 RSSSRL--TVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSIMNAKAKMLGMK 260
             SS++   VGT ++  +L    ++ S N A+ A+     G    FVS+MN+ A+ LGM 
Sbjct: 101 PDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMN 160

Query: 261 DTRYVEPTGLSS-RNQSSAQDLALLVNAAYSD-ATVRSLSTSPEYQVEVGNRMLQFNTTN 318
           ++ +  P GL +    S+  D+ALL  A   D   +  L +   +     N + Q N  N
Sbjct: 161 NSSFANPHGLDNPALYSTPYDIALLGRAIIRDLPEIYPLYSELSFTY---NGITQHN-RN 216

Query: 319 RLVKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAERV 374
            L++     +   KTGY S AG  L   A     +LI V + S    SR A+++++
Sbjct: 217 GLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQL 272