Pairwise Alignments

Query, 188 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Variovorax sp. SCN45

Subject, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

 Score = 41.6 bits (96), Expect = 9e-09
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)

Query: 25  HVRDEEAALDIVQDSMMKLAQHYG--DKPANELPMLFQRILSNCTLDWFRRQKTRRALFS 82
           HV  E+ AL++VQ++M  + Q     D   + L      I  N + D  RRQK R A   
Sbjct: 47  HVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYV- 105

Query: 83  NLSDFDSVDDDGDFDLLENFVSPTDSRESESAEDTTRRAQVFHEIEEQIAALPGRQREAF 142
            L+D          D+      P D  +  + E    + QV   ++     LP  Q++  
Sbjct: 106 -LAD----------DIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDR----LPEAQQQVI 150

Query: 143 LMRYWEEMDVAETAAAMGCSEGSVKTHCSRAVHALSKALKAKGI 186
              Y EE+   + A  +    G+VK+    AV  L  ++ A+ +
Sbjct: 151 KAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAESL 194