Pairwise Alignments

Query, 188 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 23/165 (13%)

Query: 17  RAFKRSVYHVRDEEAALDIVQDSMMK-LAQHYGDKPANELPMLFQRILSNCTLDWFRRQK 75
           R F  S+   RD   A D+VQ +  + LA     +P         RIL N  +D  RRQK
Sbjct: 20  RRFAISLCGSRD--VADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQVRRQK 77

Query: 76  TRRALFSNLSDFDSVDDDGDFDLLENFVSPTDSRESESAEDTTRRAQVFHEIEEQIAALP 135
           T             V DD         ++        S E  T        + E I  LP
Sbjct: 78  TA-----------GVQDD---------ITERHDIAGSSGERETEARLTLKTVAEAITELP 117

Query: 136 GRQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCSRAVHALSKA 180
             QRE  L+   EE+   E A  MG   G+V +   RA  +L++A
Sbjct: 118 DEQREVVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSLAEA 162