Pairwise Alignments

Query, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 228 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  157 bits (397), Expect = 2e-43
 Identities = 92/227 (40%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 1   MAYQFQFDALAPYTGQLVEGLLHTLGYAASSIVLGMAIGVAGSLALVYGGKPLRGVTRVY 60
           M Y FQF  L  Y  Q+V GL  T+G +   I  G+A+G+  ++         R + R+Y
Sbjct: 1   MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60

Query: 61  VEFFRNTPALVQLFLIYFGLPNLGIRLEAPVAGVISLALYCGAYMVEVFRSGLMSVPRGL 120
           VE  RNTP LVQ+F+I+FGLPN+GIRL    +  I+L L  G Y+ E+ R G+ +  R  
Sbjct: 61  VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120

Query: 121 SEAGAALGLRPRQVLVHVLFVPALRNVFPSLASQMVLTLIGTSLISQIGVEDIFHAGSFI 180
            EA  +LGL   Q L +V+  PAL  VF  + SQ VL ++ TSL+S IGVED+  A    
Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180

Query: 181 DSRTFRSFEVYLVICAMYFVAVQALRVILGFV--------QRRLFGK 219
            S TFR+ E+YLV+  +Y V     R +L           +RRL G+
Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRRRLLGR 227