Pairwise Alignments

Query, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score =  122 bits (306), Expect = 5e-33
 Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 1/203 (0%)

Query: 17  LVEGLLHTLGYAASSIVLGMAIGV-AGSLALVYGGKPLRGVTRVYVEFFRNTPALVQLFL 75
           +++ +  TL     S +L + I V  GS   +   K L  V   YVE FR TP L+QLF 
Sbjct: 13  IIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLLIQLFF 72

Query: 76  IYFGLPNLGIRLEAPVAGVISLALYCGAYMVEVFRSGLMSVPRGLSEAGAALGLRPRQVL 135
           IY+GLP++GI + +  A V+ L+L  GAY+ E+ R+ + SVP G  EA  +LG+   + +
Sbjct: 73  IYYGLPSIGITMSSTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEAAESLGMGKIESM 132

Query: 136 VHVLFVPALRNVFPSLASQMVLTLIGTSLISQIGVEDIFHAGSFIDSRTFRSFEVYLVIC 195
           V+++   A R   P L +     L  +SLIS + + ++   G  I +RT R FE+YL I 
Sbjct: 133 VYIVLPQAFRITIPPLVNSFSSILKESSLISVLAITELTRIGQLIYTRTSRPFEIYLTIG 192

Query: 196 AMYFVAVQALRVILGFVQRRLFG 218
            +Y + V  + +    ++++L G
Sbjct: 193 LIYLILVSIISIGSWKIEKKLNG 215