Pairwise Alignments

Query, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 221 a.a., polar amino acid ABC transporter permease from Klebsiella michiganensis M5al

 Score =  156 bits (394), Expect = 3e-43
 Identities = 84/220 (38%), Positives = 128/220 (58%), Gaps = 4/220 (1%)

Query: 1   MAYQFQFDALAPYTGQLVEGLLHTLGYAASSIVLGMAIGVAGSLALVYGGKP--LRGVTR 58
           M  Q  F  L P+  +L+ GL  T+     + + G+ IG+ G  A V  G+P     +  
Sbjct: 1   MTEQLHFSELWPHWPELLAGLWVTIQLTVLATIGGLTIGIFG--AAVRSGRPTWFSRIWG 58

Query: 59  VYVEFFRNTPALVQLFLIYFGLPNLGIRLEAPVAGVISLALYCGAYMVEVFRSGLMSVPR 118
            YVE  RNTP +VQLF I FGLPNLG+++ A  A ++++ +  GAY  E+ R+G+   P+
Sbjct: 59  GYVELIRNTPFVVQLFFIVFGLPNLGLKMTAGEAALLAMVVNLGAYSTEIVRAGIQVTPK 118

Query: 119 GLSEAGAALGLRPRQVLVHVLFVPALRNVFPSLASQMVLTLIGTSLISQIGVEDIFHAGS 178
           G  EAG  LGL   Q  + V+  PAL+ ++P+L SQ ++ ++G+S++SQ+  E++  A +
Sbjct: 119 GQWEAGRVLGLTRTQTFIQVILPPALQRIYPALVSQCIIVMLGSSVVSQVSYEELTFAAN 178

Query: 179 FIDSRTFRSFEVYLVICAMYFVAVQALRVILGFVQRRLFG 218
            I SRTF SFEVYLV   +Y      +R +L    R+  G
Sbjct: 179 LIQSRTFLSFEVYLVTTGIYLALSITMRQLLLAAGRKWLG 218