Pairwise Alignments

Query, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (250), Expect = 5e-26
 Identities = 95/369 (25%), Positives = 164/369 (44%), Gaps = 29/369 (7%)

Query: 13  REFALLRTRPWDLAMISWVPLLAVFLIWWIFSAGLPERLPIGVLDQDHSSLSRQLVRFLD 72
           +EF  L        M+  +PL+ + L  +  +  +   +PIGV+DQ  SS SR LV  + 
Sbjct: 13  KEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDV-RNIPIGVVDQSDSSFSRLLVESVK 71

Query: 73  ATPGLRVVQQYSDEGEMARALTSGAVDAAVQLPRDL-SRDVKQGRVGQVVLLHNAQLGTH 131
            T  +RV Q Y    E  +A+ SG + AA+ LP DL +R  +Q  +GQ ++         
Sbjct: 72  VTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLI--------- 122

Query: 132 SSLIQRDVRTAVATVSGGVELAVRNKRGESMTAARVSMEPIKASMVALFNTSTDYEQFLG 191
                        T+  G  L ++N     +    +        +  L+N S    +   
Sbjct: 123 ---------DGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPS----RRSA 169

Query: 192 AALIPALLH-ILAMTAGAWAVGRELRDRSIGAWLGAAPRWHEALAALAGKLALPFLSLSA 250
             ++P LL  IL MT   +     +R+R  G           ++  + GK+ +P++ +  
Sbjct: 170 VNIVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKI-VPYIFVGL 228

Query: 251 VAIAAMVWITAGRGWHPV-GSLGWTLFALVVFLALSIALGAFASSLTRSLRTALSATGFI 309
           + +A ++ +       P+ G+L   LF  ++F++ S+ LG   S++  +   A+  T FI
Sbjct: 229 IQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFI 288

Query: 310 TAPAFAFGGVGFPLVAMPFFARMWANLLPYTHYIRVQMEQLQMGAPVLYSVATPLWMVLG 369
             P+    G  FP   MP  A+  + LLP TH++R+    +  GA +       LW+ L 
Sbjct: 289 LLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALF 348

Query: 370 T--AVLLAA 376
           T   ++LAA
Sbjct: 349 TLFGLMLAA 357