Pairwise Alignments

Query, 394 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 24/358 (6%)

Query: 27  MISWVPLLAVFLIWWIFSAGLPERLPIGVLDQDHSSLSRQLVRFLDATPGLRVVQQYSDE 86
           MI  +PL+ + L  +  +      LP G+++   SS SR LV+ ++AT  +   + YS  
Sbjct: 25  MIVMIPLVQLMLFGYAINTDA-RHLPAGLVNLSDSSYSRALVKAVEATQVVDFKRSYSSA 83

Query: 87  GEMARALTSGAVDAAVQLPRDLSRDVKQGRVGQVVLLHNAQLGT--HSSLIQRDVRTAVA 144
            +   A+T G V A + L  DL          + ++ H A  G    +  + + +     
Sbjct: 84  AQAEAAITRGEVKAVLYLGADLD---------ERLVRHPAFAGQAYFAEPVGQWLVDGSD 134

Query: 145 TVSGGVELAVRNKRGESMTAARVSMEPIKASMVALFNTSTDYEQFLGAALIPALLH-ILA 203
           TV      ++R    + +T   +   P    +V  FN     EQ     ++P LL  IL 
Sbjct: 135 TVVASTIRSLRQMPLDEITGRTLKSNPPSFEVVQYFNP----EQRSVVNIVPGLLGVILT 190

Query: 204 MTAGAWAVGRELRDRSIGAWLGAAPRWHEALAALAGKLALPFLSLSAVAIAAMVWITAGR 263
           MT   +     +R+R  G            L  + GK+  P++ +  V +  +  ++AG 
Sbjct: 191 MTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIT-PYVLVGFVQVTII--LSAGH 247

Query: 264 GWHPV---GSLGWTLFALVVFLALSIALGAFASSLTRSLRTALSATGFITAPAFAFGGVG 320
               V   G +    FA ++F+  S+ LG   S++ ++   ++  T FI  P+    G  
Sbjct: 248 LLFDVPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFM 307

Query: 321 FPLVAMPFFARMWANLLPYTHYIRVQMEQLQMGAPVLYSVATPLWMVLGTAV-LLAAS 377
           FP  AMP  A+  A  LP TH++R+    +   A V       LWM+  T + LL AS
Sbjct: 308 FPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLGLLVAS 365