Pairwise Alignments

Query, 384 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 387 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 28/364 (7%)

Query: 23  DKGVLLIMLIAPIIYGFFYPWPYGTQAVTRVPVAVVDQDHSALSRQIARFAMANPRLDVR 82
           DK +   +   PI+      W +       +P  VVD  HS LSRQ+ R   A   L V 
Sbjct: 20  DKWLFSCLTWVPILLAVSIWWIFSQGIARDLPFGVVDFSHSQLSRQLIREVDATSTLLVS 79

Query: 83  MVTSDVHEAQQALWRGEIEGYALLPADLKRSVLRGTSAVVTIEGNGAYALLNKAVLYGFS 142
              + V EA QA+   +I G+ ++PA   +++ R     VT   N    L+ K V     
Sbjct: 80  QHFASVDEASQAMRSNQIYGFMVIPAQFDKAIYRQEQPQVTTFYNSQMILVGKLVNSAVV 139

Query: 143 EAVGTVSAGVEIRKLQAGGQSAVQAARSRS-PLNTQLVALFNPTEGYGSYVVPAVALLIL 201
           +A GT +A V++ K  A       AA  RS P+ TQ+  LFN    Y  ++V A+   + 
Sbjct: 140 QAQGTFNAQVDVMKNLATKTHTTLAAMGRSVPVRTQITPLFNQNTNYAQFLVSAIVPALW 199

Query: 202 QQTLLMGAAM-LAGTWAEAGRLRATMGAWLGR----------LGALSGFGFLSGLFYFGW 250
           Q T+++   + LA  +   G     + +WL +          L  L  F  L GL +  W
Sbjct: 200 QITIVVSTILILAANYRHYG-----LKSWLAQSPLTQLTRTLLPYLPIF-MLQGLGFLIW 253

Query: 251 VFFLQDYPRGGNPLGAMVLLAFYVPAICTLGLLLGCWFRDRERALQVL-LFTALPMAFLS 309
            + +  +P  G+    ++  +  V A   +G        D  RA+     FTA   AF+ 
Sbjct: 254 FYDVLRWPMFGHFSTLLLAQSITVVACVIMGAFFYFLTLDPARAMSFAGAFTAPSFAFM- 312

Query: 310 GFSWPVEALPGPLQALRWVFPSTAGIQGSLRLNQMG------APLHDVLPYIGVMLALTL 363
           G ++P   +    QA R + P +  I+  +++NQ+       + L  ++   G +L L L
Sbjct: 313 GITFPASDMNTLAQAWRNLLPISHYIE--VQVNQVSYGLEALSSLQPMVNMWGYLLPLGL 370

Query: 364 AGLL 367
           A LL
Sbjct: 371 ALLL 374