Pairwise Alignments

Query, 258 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 270 a.a., amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 92.4 bits (228), Expect = 9e-24
 Identities = 76/260 (29%), Positives = 112/260 (43%), Gaps = 11/260 (4%)

Query: 4   MKTLFAAALVCAAPL---LAHADKLADIKAKGAIRIATTIDAAPWGFTDAAGKP-TGLDV 59
           MK L   AL     L   +AHA KL +IK +G +         P+GF D   K   G DV
Sbjct: 1   MKRLLLLALTLGLVLTAAVAHAGKLDEIKQRGTLVCGVKDSVVPFGFIDETSKQLVGFDV 60

Query: 60  ELAENVAKAMGVKLELQQVTGANRIPYLLSNKVDVVIAALGSSPERAKQVAFSKPY--AA 117
           ++ + +A   GVKLE++ VT A RIP L    VD+V A +    ER   + FS  Y  A 
Sbjct: 61  DICQFIADRAGVKLEVKTVTSATRIPMLTQGSVDLVAATMTHKFERDDVIDFSITYFDAG 120

Query: 118 VYLGVYGGKGTPKFAKVSDLAGQTVAVPKGSTPDLSLSELAPGAKLIRLEDTASTISAFL 177
             L V  G G       +DL G+ VA  KGST + ++    P   ++  ++      A  
Sbjct: 121 QRLLVKKGGG---IKSAADLKGKKVATVKGSTSEKNMKAAQPDCVVVSFDEYPQAFLALK 177

Query: 178 SGQAPLFA--ENNFIAQKVADENPAKGIEMKSLIRISPAYMAVQPSETALLAEMNKIIDA 235
            G+A      E   +  K +D  P K   +   I   P  + +  +++     +NK +  
Sbjct: 178 QGKAEAVTTDEPILVGLKNSDPEPDKWDIVGDFIASEPYGLGLVENDSKFRDFVNKSLAE 237

Query: 236 QAADGSLAALRLKWFKDEQK 255
               G+      KWF  + K
Sbjct: 238 MWTTGAYQKSYDKWFGKDTK 257