Pairwise Alignments

Query, 623 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

 Score =  408 bits (1048), Expect = e-118
 Identities = 263/706 (37%), Positives = 380/706 (53%), Gaps = 99/706 (14%)

Query: 1   MSYLVLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAK 60
           MSYL LARK+RP  F E+VGQ HV+ ALENAL   RLHHAYLF+GTRGVGKTT+ R+ AK
Sbjct: 1   MSYLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAK 60

Query: 61  SLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKP 120
            LNC+      GITATPCG C  C++ID GRFVD  E+DAAS   V++ + LL+   YKP
Sbjct: 61  GLNCET-----GITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKP 115

Query: 121 VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180
            +GRFKV++IDEVHML+  +FNA+LKTLEEPPEY+KF+LATTDPQK+PVT+LSRCLQF+L
Sbjct: 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHL 175

Query: 181 RPMAPETVLEHLTGVLQTENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGNGELVET 240
           +P++ E + + L  VL  E + ++ +AL LLA AA GSMRDALSLTDQAIA GNG +   
Sbjct: 176 KPISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSD 235

Query: 241 GVRQMLGSVDRGHVFRLIEALAQGDGKTVVETSEALRVDGMSAASTLEEMTAVLQAMAVL 300
            V  MLG++D  H   L++A++    + V++  E L  +G+     L++++  L  +A+ 
Sbjct: 236 IVAHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMY 295

Query: 301 QAVPSRAESADAATDPDAADTARLAALMPADETQLLYSLCLHGRGELGLAPDEYAALTMV 360
           QA+P+  +     + P+A+    LA  +   + QL Y + L GR +L L+P     + M+
Sbjct: 296 QALPATLDK----SLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEML 351

Query: 361 LLRLLAFKPSNAA----------ASTASTEKKTLNEAAAAAPQ------------APARA 398
           +LR++AF+PS+ +          A TA T     ++ AAAAPQ            A    
Sbjct: 352 MLRMMAFRPSHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAM 411

Query: 399 PAPVPAPAPVVRPPAE---------------------------QPAAAAPAPAPI----- 426
           P PV  P    +P  E                           Q  A+ PA A +     
Sbjct: 412 PHPVAPPMMAAQPVVESAVPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQLR 471

Query: 427 ---------------SPAPTSPPAPAGQRLA-----VVDEPRRQPEQRPEPPD-----AP 461
                          S A ++ PA A +R+A     V   P R  E   EP +      P
Sbjct: 472 SKRQEVQNKGADGKKSDATSATPASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRP 531

Query: 462 AKVVGVPIRVQPPPSARDIPPAEGSQRVPYTPIPQSEDG---DFWHATVTQLVASEAINA 518
            + + V ++ +  P+   +  A   ++ P       E+    D W A V +L  ++    
Sbjct: 532 MQPIEVAVKSEVTPT--QLKKALEHEKTPEMGAKLIEEAVAQDAWSALVQRLETAK---- 585

Query: 519 LTRELALQSQLVGR-DTDQWMLRIERETLNQPSSREKLTAALNG-LGHDIKLTIEIGGVV 576
           +  +LAL S  V + D     LR     L+   ++++L  ALN  LG    L I +G   
Sbjct: 586 MVEQLALNSAFVRQGDQISLTLRPSHAHLHNEKAQQELEQALNHVLGEACSLNITVGQEG 645

Query: 577 DSPARRNRQAADERQRVAEDAIHNDPEVQALMRDFDAKIVPGTLKP 622
           ++P     +   ++   A  ++  DP VQ + R F+A++   +++P
Sbjct: 646 ETPLELRERLYQQKLTSALHSLQTDPNVQFIERRFNAQLDSDSVRP 691