Pairwise Alignments

Query, 623 a.a., DNA polymerase III subunits gamma and tau (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

 Score =  102 bits (255), Expect = 2e-26
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 29/282 (10%)

Query: 9   KFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68
           K+RP+T  E+VG   +++ L N +  + + H  LF+G+ GVGKTT +  LAK L      
Sbjct: 8   KYRPETLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAKDLYG---- 62

Query: 69  GQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQSLLEQ-AVYKPV-QGRFK 126
                              D+ R  ++ EL+++  RG+D +++ ++  A  KP+    FK
Sbjct: 63  -------------------DTWR-ENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFK 102

Query: 127 VFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPE 186
           V  +DE   LT+ A NA+ +T+E+  +  +F+L+   P K+   + SRC  F   P+  E
Sbjct: 103 VIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTE 162

Query: 187 TVLEHLTGVLQTENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGNGELVETGVRQML 246
            ++E+L  + + EN+  E   +  +   + G MR A+++   A A  + E+ E  V ++ 
Sbjct: 163 DLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD-EITEEIVYKVA 221

Query: 247 GSVDRGHVFRLIEALAQGDGKTVVETSEALRVD-GMSAASTL 287
                  + ++ +    G      E    L +D GMS    L
Sbjct: 222 SKARPDEIKKMTQLALNGKFVEAREQLYNLMIDWGMSGEDIL 263