Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 84.7 bits (208), Expect = 2e-20
 Identities = 104/460 (22%), Positives = 179/460 (38%), Gaps = 76/460 (16%)

Query: 354 LIAAFADVKRAHGWVDMNDVE-QAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPL 412
           L  A+ +     G VD  ++  +A +LL G       ++E   AR  H+L+DEFQDTN +
Sbjct: 173 LYTAYQEACDRAGLVDFAEILLRALELLRGNQH----IREHYQARFKHILVDEFQDTNAI 228

Query: 413 QWQALYGWLSAYTGAQGRAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFVREGLDGELLN 472
           Q    Y WL    GAQ     V IVGD  QSIY +R A  +     +KF RE      + 
Sbjct: 229 Q----YAWLRMMAGAQS---NVMIVGDDDQSIYGWRGARVE---NIEKFTREFPSVNTIR 278

Query: 473 CDHTHRNARAVVGLVNSAMLAAQDAGEFDGYRAHTTERKDEGELLKLPAIDRDALGAAEA 532
            +  +R+ + ++   N+ +             A+ +ER                      
Sbjct: 279 LEQNYRSTKTILEASNTLI-------------ANNSERM--------------------- 304

Query: 533 APADDGMLHWRDSLVTPRVLPEEQLLQKECEQAAQWVAQRI----ADGTPPRQIMVLARR 588
                G   W D LV   +       + +    A++V  +I      G       +L R 
Sbjct: 305 -----GKQLWTDGLVGEPISVYSAYNELD---EARFVVSKIKGWQEQGGTLTDCAILYRN 356

Query: 589 RSRLSAMQDALRQRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPVF 648
            ++   +++AL Q  +  +        +  E++D ++ +  + +   D +  R + +P  
Sbjct: 357 NAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPR 416

Query: 649 GIGDDALVQLALRQRERPSFNWFSLIQKSED------LPAELTEAGVKLRKWQRWLMTLP 702
           G+GD  L  +    R+R    W + +    D        + L+     +   +   + +P
Sbjct: 417 GLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMP 476

Query: 703 PHDALDAIFNDGDLLAKFGAAVPAPMRQSALANLRGVLTASLDIDGAR------FTTPYA 756
            H   D       LL  +         ++ + NL  ++TA+   +           T + 
Sbjct: 477 LHVLTDHAVKTSGLLEMY-QQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFL 535

Query: 757 LVRSLRAGGVRAPSVAAPDAVQLLTVHGAKGLEADTVLML 796
              +L AG  +A      DAVQL+T+H AKGLE   V M+
Sbjct: 536 THAALEAGEGQADE--HDDAVQLMTLHSAKGLEFPLVFMV 573



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 25 PRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRERLDQ 83
          P  ++ + A AG+GKT +LV RI   +  E  S   P  ++A+TFT KAA EMR R+++
Sbjct: 22 PLENLLILAGAGSGKTRVLVHRIAWLMSVEEAS---PFSVMAVTFTNKAAAEMRGRIEE 77