Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score = 81.3 bits (199), Expect = 2e-19
 Identities = 121/495 (24%), Positives = 204/495 (41%), Gaps = 93/495 (18%)

Query: 324 AEAELQVLCGAQAQHAAWLYQQRMTRLTRILIAAFADVKRAHGWVDMNDVEQAAQLLLGQ 383
           A+ E Q+L      H   LYQ++M               +++  +D +D+     LLL  
Sbjct: 156 AKGEQQLLFA----HCFELYQKQM---------------QSYNALDFDDLILLPVLLLRS 196

Query: 384 SALSGWVQERLDARIAHLLIDEFQDTNPLQWQALYGWLSAYTGAQGRAPRVFIVGDPKQS 443
           +     V++R   RI +LL+DE+QDTN  Q++ +        G +GR   + +VGD  QS
Sbjct: 197 NEE---VRQRWQNRIRYLLVDEYQDTNTSQYELV----KLLVGERGR---LTVVGDDDQS 246

Query: 444 IYRFRRAEPQVFIAAKKFVREGLDGELLNCDHTHRNARAVVGLVNSAMLAAQDAGEFDGY 503
           IY +R A+PQ        V  G D   L      +N R+   ++ +A +    A     Y
Sbjct: 247 IYSWRGAKPQ------NLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILI--ANNPHVY 298

Query: 504 RAHTTERKDEGELLKLPAIDRDALGAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQKECE 563
           +        EGE LK+   + +                                   E E
Sbjct: 299 QKALFSELAEGEKLKVILANNE---------------------------------DHEAE 325

Query: 564 QA-AQWVAQRIADGTPPRQIMVLARRRSRLSAMQDALRQRHIPVQQPEKNELHDAPEVQD 622
           +  A+ +A +  + T  R   +L R   +   ++ +L Q  +P +           E++D
Sbjct: 326 RVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKD 385

Query: 623 VVALIDALVSPAHDLSLARALKSPVFGIGDDALVQLALRQRERPSFNWFSLIQKSEDLPA 682
           ++A +  LV+P  D +  R + +P   IG   L +L      R      SL   S +L  
Sbjct: 386 IMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGK----SLFTASFELGL 441

Query: 683 E--LTEAGVK-LRKWQRWLMTLPPH-------DALDAIFND---GDLLAKFGAAVPAP-M 728
           E  L+  G++ LR++  WL+ +  +       +A+ A+  D    D L +  A+  A  M
Sbjct: 442 EQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEM 501

Query: 729 RQSALANLRGVLTASLDIDGA---RFTTPYALVR-SLRAGGVRAPSVAAPDAVQLLTVHG 784
           R   +++L   + A L+ D       T    + R +LR    R       DAVQL+T+H 
Sbjct: 502 RMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHA 561

Query: 785 AKGLEADTVLMLDCD 799
           +KGLE   V ++  +
Sbjct: 562 SKGLEFPYVYLIGAE 576



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 31 VEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRERLDQWL 85
          V A AG+GKT ++ ++I   + + G  A     I A+TFT KAA EM+ER+ Q L
Sbjct: 20 VLAGAGSGKTRVITNKIAYLVQQCGYKA---RNIAAVTFTNKAAREMKERVAQTL 71