Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 1259 a.a., exodeoxyribonuclease V, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 174/723 (24%), Positives = 275/723 (38%), Gaps = 130/723 (17%)

Query: 31  VEACAGAGKTWMLVSRILRALLEEGDSACEP---HEILAITFTKKAAGEMRERLDQWLED 87
           +EA AG GKT+ +    LR LL  GD   EP    +IL +TFT  A  E+R+R+ + ++ 
Sbjct: 25  IEASAGTGKTYTISGLYLRLLL--GDGLSEPLSCEQILVVTFTNAATEELRDRIRRRIQ- 81

Query: 88  FVERTPEELVAQLVMRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTF----------- 136
                    VA     G+E        P ++ LY +  E  R +  R F           
Sbjct: 82  ---------VAFKCFLGLE-----INDPFVQALYDKTPESERAIALRRFDLALKSLDEAA 127

Query: 137 ----HAWFAGLLRNAPLAVLRELGLPSNYELLEDDAEARSHTWRPFFEAVTADRNALADY 192
               H +   +L  A LA    L   S++ L  DD+E   H  R F+         L +Y
Sbjct: 128 IFTIHGFCQRIL--ADLAFESSLLFESDFTL--DDSEFLHHAVRDFWREACYP---LPEY 180

Query: 193 YAVVATHGRSQTAKALGEALSKRVEFSLADAE--NAVQHFSAFYPSLDGLEEPTDALRGS 250
            A +     S+     G     R     ++A+    VQ F+    SL          R  
Sbjct: 181 LAQIIA---SEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLS-----QSVQRFK 232

Query: 251 AVRQRWLDRAAAL-----------GKESNKTPQKAAEAIIDI-----FGTGEPEAGALPA 294
               R  D   AL           GK S+  P K AE    +     FG G P    L A
Sbjct: 233 LAWPRGRDALLALLHSLPLNGQRFGKASDNYP-KLAEMFDQLDNFIAFGHGLPPLKVLEA 291

Query: 295 -ALAHLRKNFFVATEDRLNKNLQKFPAAQEAEAELQVLCGAQAQHAAWLYQQRMTRLTRI 353
            +L+ L+ N     +  +  ++ + P     E   Q+     A   A+L+  +     R 
Sbjct: 292 LSLSELKLN-----KGGVLPSVSEAPLLDHME---QLATLINAIKPAFLFSAKQGISER- 342

Query: 354 LIAAFADVKRAHGWVDMNDV--EQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNP 411
               FA  K+    +  +D+    AA +L     L   V  R        LIDEFQDT+P
Sbjct: 343 ----FAKQKQLKNVLTPDDLLTTLAAAMLANPDTLPKAVASRFPVA----LIDEFQDTDP 394

Query: 412 LQWQALYGWL---------SAYTGAQGRAPR-----VFIVGDPKQSIYRFRRAEPQVFIA 457
           LQ+ A++ W+            T  + +A       + ++GDPKQ+IY FR A+   +I 
Sbjct: 395 LQF-AIFSWIYQTRLGVKAQNSTAVEPKARTDSKLSLLMIGDPKQAIYAFRGADIYTYIE 453

Query: 458 AKKFVREGLDGELLNCDHTHRNARAVVGLVNSAMLAAQDAGEFDGYRAHTTERKDEGELL 517
           A++  +          D  +R++R +V  VN   L AQ    F          K      
Sbjct: 454 ARRQTQAH-----YFLDTNYRSSRNLVAGVNH--LFAQHPNPFISQSIPFDRVKTPASAA 506

Query: 518 KLPAIDRDALGAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQKECEQAAQWVAQRIADG- 576
               ++  A  AA        +   R+           Q L ++       +    A+G 
Sbjct: 507 AKQLVESTANSAALR------LKLLREGETGLNKASARQTLAEDTAAEITRLLTEAANGQ 560

Query: 577 --TP-----PRQIMVLARRRSRLSAMQDALRQRHIPVQQPEKNELHDAPEVQDVVALIDA 629
             TP      + I +L R R+  + M+ AL +R I      ++ + D  E +++  ++ A
Sbjct: 561 CHTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSRDSVFDTVEAREMALILRA 620

Query: 630 LVSPAHDLSLARALKSPVFGIGDDALVQLALRQRERPS-----FNWFSLIQKSEDLPAEL 684
           L SP  + +L  AL + + G   + +      + +R       F    + QK   +PA L
Sbjct: 621 LASPKDERALRSALATALLGYSAEQIHAFNQDEEQRQMLLEQFFALHQIWQKRGIMPALL 680

Query: 685 TEA 687
           + A
Sbjct: 681 SLA 683