Pairwise Alignments

Query, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

Subject, 719 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 78.2 bits (191), Expect = 2e-18
 Identities = 131/515 (25%), Positives = 207/515 (40%), Gaps = 106/515 (20%)

Query: 357 AFADVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQA 416
           A+A+ +  HG +D +D+    + LL +      +   L  R  ++++DE+QDTN +Q + 
Sbjct: 180 AYAEYRAEHGLLDYDDLLFEVERLLRERPD---LLAHLRDRYRYIMVDEYQDTNLVQARL 236

Query: 417 LYGWLSAYTGAQGRAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFVREGLDGELLNCDHT 476
           +   L A     G    V  VGD  QSIY FR A  Q  ++  +F        ++  +  
Sbjct: 237 VQ--LLA-----GEGGNVMAVGDDAQSIYAFRGANVQNILSFPQFFP---GTRIIKLEEN 286

Query: 477 HRNARAVVGLVNSAMLAAQDAGEFDGYRAHTTERKDEGELLKLPAIDRDALGAAEAAPAD 536
           +R+ + V+ L N+ +  A  A     YR H    +++G    LP + R      +A    
Sbjct: 287 YRSTQPVLDLTNAILAEAPQA-----YRKHLYTSREDG---VLPQVVRPLSDLTQA---- 334

Query: 537 DGMLHWRDSLVTPRVLPEEQLLQKECEQAAQWVAQRIADGTPPRQIMVLARRRSRLSAMQ 596
                   S+V  RV    +LL+                  PP +I VL R       ++
Sbjct: 335 --------SIVVSRV---SELLRT----------------YPPHEIAVLFRAGFHSYHVE 367

Query: 597 DALRQRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPVFGIGDDALV 656
             L +  I  ++       +A  V+DV+A    +++P  DL   + + +   G+G    +
Sbjct: 368 VQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPL-DLPAFQRVAALSRGVGPKTTL 426

Query: 657 QLALRQRERPSFNWFSLIQKSEDLPAELTEAGVKLRKWQRWLMTLPPHDALDAIFNDGDL 716
           +L    R+           +   L A+L E   +LRK      T  P   L+ +      
Sbjct: 427 RLYEVARQGDPAATAHACARYPQLRADL-ELLDRLRK-----RTPAPATLLEEVIE--HY 478

Query: 717 LAKFGAAVPA--PMRQSALANLRGVLTASLDIDGARFTTPYALVRSLRAGGVRAPSVAAP 774
             +  AA P   P RQ  L  L  + +A  D+D       +    SL   G         
Sbjct: 479 QPRLEAAYPDDWPRRQQGLEQLVQIASAYRDLD------LFISDLSLEDPGTEEED---R 529

Query: 775 DAVQLLTVHGAKGLEADTVLMLDCDAPPPRAQTMGVLVEWKGSDSAPTRFVFLASEKTPP 834
           D+V L T+H AKGLE   V++LD             LVE    D  P+R     ++    
Sbjct: 530 DSVVLSTIHSAKGLEWSAVIILD-------------LVE----DRFPSRHAVTRADD--- 569

Query: 835 ACAAALLEEEQRARHREELNGLYVATTRARERLVL 869
                  EEE+R         +YVA TRARERL+L
Sbjct: 570 ------FEEERRL--------MYVACTRARERLML 590



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 29 VAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRERLDQWL 85
          V V A AG+GKT  +V R+   LLE G  A     IL +TFT+KAA EM +R  + L
Sbjct: 23 VLVIAGAGSGKTRTVVYRLAN-LLERGVPASS---ILLLTFTRKAANEMLQRASRLL 75