Pairwise Alignments

Query, 450 a.a., Na+-driven multidrug efflux pump from Variovorax sp. SCN45

Subject, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 64.7 bits (156), Expect = 6e-15
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 1/277 (0%)

Query: 29  GVTDTIIAGRYSEGALAALSVGAAIFVSVYVSLMGVLQALLPVWAELHGAGRSNEVGRSV 88
           G+ D ++ G+  E  +AA+ V A       + L+GV      + A+  GAG    V  S 
Sbjct: 37  GLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVREST 96

Query: 89  RQS-LYLAAIAIVVGMAALLAPAAVLRLTQVPPEMRGDVEMYLRVLAFALAPALLFRLFS 147
             + L     A    +  L  P  ++ LT    ++      YL + +F +         +
Sbjct: 97  ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLIITSFTMFAVACVSSMA 156

Query: 148 TLNQSLGKPQLVTWLQLGSLFVKLPLSIWFTFGGAGLPAMGLVGCGWATLCVNWAMLACA 207
              +++ KP + T+     +   + L+    FG  G PAMG+ G   AT+      +AC 
Sbjct: 157 VGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQGAAIATVLSGAIEIACL 216

Query: 208 IWLLRSSPFYRGYRLWERLEKPDWHQIRLFAKLGVPGGLAVLVEVTSFTLMALFIARLGT 267
              L        +   +     DW +I  F +L +P     L+           + + G 
Sbjct: 217 YSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGV 276

Query: 268 AAAAAHQIAANLMAVAYMVPLSLSIATSARVSFWLGA 304
              AA  +   + +++  + + +S A +  V   LGA
Sbjct: 277 QGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGA 313



 Score = 28.1 bits (61), Expect = 6e-04
 Identities = 21/99 (21%), Positives = 44/99 (44%)

Query: 260 LFIARLGTAAAAAHQIAANLMAVAYMVPLSLSIATSARVSFWLGAGDAMRARHACRLGFE 319
           L + +LG A  AA  +AA    V  ++ + ++   +   + + GAGD    R +  L + 
Sbjct: 42  LMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVRESTALTWL 101

Query: 320 QTVLCALLFSTALVTFRHPLANVYSDNPAVVALAASLML 358
            +   A       + F   + ++ +D+  V AL +  ++
Sbjct: 102 VSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLI 140