Pairwise Alignments

Query, 252 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 274 a.a., ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  115 bits (288), Expect = 9e-31
 Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 8/242 (3%)

Query: 15  VVLSIVVLLAV---WEGAILLFKIPPFVLPSLGSIVQHAFTDTGRLMAALLATLGEALGG 71
           V L IVVLLA    W+  + L +IPP+VLP    +      D   L  +LL TL   L G
Sbjct: 22  VALPIVVLLAAIVAWDLVVRLNQIPPYVLPGPLLVASTLMQDWPVLFGSLLTTLWTTLEG 81

Query: 72  YALGSILGLLLAVLLLLAPPLERVVMPLAVAVNAVPTVAYAPLFLIWFGLGAASKIALVA 131
           +   ++ G+ LA+L   +  LE  + P AV +   P +A APL LI+     A  I    
Sbjct: 82  FVAAAVGGIALALLFNQSRLLEYSLFPYAVVLQVTPVIAIAPLLLIYLPQETA-VIVCAW 140

Query: 132 LAVGFTMLVNALHGLKQADAAAVNLMRSFGAGPLKIVWRLRLPVAMPSVVTALRIGVPRS 191
           +   F +L N   GL   D     L R +GA   + + RL+LP A+P ++  LRI    S
Sbjct: 141 IVAFFPVLSNTTLGLNSVDRNLAGLFRLYGASRWQTLLRLKLPAALPYILGGLRIAGGLS 200

Query: 192 MIVAIVGEM----LGAYAGLGRMIYESTQQVDLLSVWSAVLIASVASMVFYGLLVWIDQK 247
           +I A+V E+     GA +GL   I ES  ++++  +++A+L+ S A +V Y LL  I   
Sbjct: 201 LIGAVVAEIAAGSAGAGSGLAYRIAESGYRLNIPRMFAALLLLSTAGIVIYLLLALISHL 260

Query: 248 LV 249
           L+
Sbjct: 261 LL 262