Pairwise Alignments

Query, 252 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 322 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  130 bits (327), Expect = 3e-35
 Identities = 82/250 (32%), Positives = 131/250 (52%), Gaps = 10/250 (4%)

Query: 6   QRAVRSPALAFIGLALV--WELYVHAFAPSPRYLPALSAIAQDAWSVWPQLVRGFGRTLL 63
           QRA R       GL L+  WE+ V  F      LPA SA+A    +  P L   F +T+L
Sbjct: 69  QRAARLAVPLLFGLWLLFCWEMAVRVFDVPKVLLPAPSAVALALATHAPTLWADFVQTVL 128

Query: 64  ETVL-GFALGAVFGCFCGTVFTYSRWMERSVFPLFVVSQTVPVVAFGALIVIWFGNSLLA 122
              L G+ LG++ G           ++ R + P+  ++  VP++    ++V+WFG    +
Sbjct: 129 RGALAGYVLGSLLGALLALACDRVPFLARGLLPIASLAGAVPIIGIAPIMVMWFGFDWPS 188

Query: 123 KVMTAFFLTFFPVTVNTLRGLKSCDPQRIALMKSFGANRLVMFFKLAVPSALPQIMVGLR 182
           K      +T FP+ VNTL GL++ +P+++ LM+S+ A        L +P+ALP +  GL+
Sbjct: 189 KAAVVVVMTLFPMLVNTLAGLRAAEPEQLDLMRSYAAGWGRTLVLLRLPAALPFLFNGLK 248

Query: 183 VAIGLSLIGSVVGEWFG-ETVGLGVML---MEAMNADLVVRLWVVMFACGLMGALLYGLL 238
           +   L+LIG++V E+FG   VG+G  +   +  MN D+V   W  +    + G+  YGLL
Sbjct: 249 INATLALIGAIVAEFFGTPIVGMGFRISTEVSRMNTDIV---WASIAVAAVAGSGFYGLL 305

Query: 239 TFVERRLVWW 248
             +E+RL  W
Sbjct: 306 ALLEKRLTHW 315