Pairwise Alignments

Query, 335 a.a., Pyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 333 a.a., ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components from Pseudomonas stutzeri RCH2

 Score = 53.5 bits (127), Expect = 7e-12
 Identities = 75/325 (23%), Positives = 126/325 (38%), Gaps = 16/325 (4%)

Query: 8   ILAAVAASMALLAGMPASAAEKVSVRLKWLAQAQFAGFYVAKAKGFYDQAGLDLTINPGG 67
           +LAA  A   L + + + AAEK+ +    +  A +  FYVA  K  +   GLD+ +    
Sbjct: 11  LLAAGLAVATLFSPLASQAAEKLKIGT--VVWAGYGPFYVADKKDLFKPHGLDVDLQ--- 65

Query: 68  PNLNVETLVASGNDTFGLAGGTET---VLLAREKGLP-LVCIGVTVQNTPFTYVTYKDSG 123
              N   L+ +   +  L GG  T   V+ +  KGL   V + +   N     V   D+ 
Sbjct: 66  -FFNDPALIPTAMLSRALDGGMLTYDQVVASVAKGLKHRVVMPIDFSNGGDAIVA--DAS 122

Query: 124 ITKVKDFAGKKVA-TWFTGTQYTLYSMLASAGVKQSDLTIVPQSGSMAPFVEKQFDV-AA 181
           I  V DF GKKV     + + + L   L   G+   D+  V  +    P      ++   
Sbjct: 123 IQSVTDFRGKKVGFNPLSPSDFLLAYALQQNGMSDKDINAVNMTPEGIPGAMASGNLPIG 182

Query: 182 ATYYNELNTLKEQGLGDKLTLIKPDDYGVVVQQDTVLVSEKYRNEKPQQVQAFMNATIKG 241
            TY   ++ +   G G K  ++        +  D ++  E    +KP  ++A +   + G
Sbjct: 183 VTYEPNVSQILSMGGGGKFKVVYSSKDAPGLITDVLVFDEAVIAKKPAAIKAMIQGYLDG 242

Query: 242 WKYALQNKKEAIDIVMAAAPSLNRAHQEAMLDEFE-KLVKAGKGTTDGILAIDLPTVEKM 300
             Y   + +E+ +I+            E M   +   L + GK  T G           +
Sbjct: 243 LAYMQAHPEESAEIIGEVLGVSAEEAVEQMAGAYNIPLAEMGKSFTPGEDTHSFHGSGAI 302

Query: 301 QTQLVGYKA-LKAPADLSKAYDASF 324
             +L+     +    D SK YDA F
Sbjct: 303 IAKLLKDNGQIPTIPDFSKTYDAQF 327