Pairwise Alignments

Query, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

Subject, 693 a.a., type IV pilus secretin (or competence protein) PilQ from Pseudomonas stutzeri RCH2

 Score =  110 bits (276), Expect = 2e-28
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 23/304 (7%)

Query: 379 NSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRRAQVLVESLIVEVTE 438
           N+ G     G + V  D  TN +I    +     LRR++  LD    QV++E+ IVE   
Sbjct: 396 NTQGQTDERGSMAV--DDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANV 453

Query: 439 RDASELGIQWMAGG----GNGRGVRAGTNFGGATLNPNARNTIEAMPRGLNIGIVDGTVN 494
                LG++W  GG     NGRG   G +  G     +   +    P  +++G+ + T  
Sbjct: 454 DYDKALGVRW--GGTQLFANGRGAVYGNDDLGDEGGNSGDESSGNFPF-VDMGVTNRTAG 510

Query: 495 LPGVGEI---LNLKMLARALQAKDGANILSTPNILTLDNEAASIMVGKTVPFVSGQYITN 551
           + G+G I   L L +   A++      ++S P ++T D E A I+ G  +P+      ++
Sbjct: 511 I-GIGYITDNLILDLELSAMEKSGNGEVVSQPKVMTADKETAKILKGSEIPYQEAS--SS 567

Query: 552 GNSSTNPFQTIQREDIGLKLNIRPQISEGGTVKLDIYQEVSTIDTQASDISGIVT-NKRA 610
           G +ST   +        L L + PQI+    + +++       D  A+D++G  T  K  
Sbjct: 568 GATSTTFVEA------ALSLEVTPQITPDNRIIMEVKVTKDEPDF-ANDVNGTPTIRKNE 620

Query: 611 LDTSILVDDGQIMVLGGLMEDSVANGTEAVPGLGALPVVGNLFRYDKRQRVKTNLMVFLR 670
           ++  ILV+DG+ +V+GG+  ++ +   + VP LG LP +G LFR D     K+ L++FL 
Sbjct: 621 VNAKILVNDGETVVIGGVFSNTQSRSVDKVPFLGDLPYLGRLFRRDIVADSKSELLIFLT 680

Query: 671 PYVI 674
           P ++
Sbjct: 681 PKIL 684



 Score = 40.4 bits (93), Expect = 4e-07
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 17/178 (9%)

Query: 40  DKVVLNFVDADITSVVSALARFLGRNFLFDPRVKGQITLVSEGEVPAATAYGMLSTALRM 99
           +K+ LNF D D+ SV+  +A F   N +    V G ITL  +  VP   A   L   L+ 
Sbjct: 277 EKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQ-NVPWDQA---LDLVLKT 332

Query: 100 RGFAIVDVGEVSRVVPVAD-AKLQGGSVNTRNPGGGLA---TRTFRLNYENAEAMLPVLK 155
           +G     VG V  V P  + A  +   + ++     LA       ++NY  A  +  + +
Sbjct: 333 KGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQ 392

Query: 156 PLIAAE------NSINAYPANNTLVVTDYIDNLERLARIIESIDTP---TSLDAEVVK 204
            +   +       S+      N ++     + L+ L RI+  +D P     ++A +V+
Sbjct: 393 SVTNTQGQTDERGSMAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVE 450



 Score = 26.2 bits (56), Expect = 0.007
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 157 LIAAENSINAYPANNTLVVTDYIDNLERLARIIES---IDTPTSLDAEVVKLRNGVAVDI 213
           L+     ++     N L+V    +   R  + +ES   I     L  EVV++    A DI
Sbjct: 328 LVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADI 387

Query: 214 AGLATELLEGSGEKGRRDIVVLADPRSNSVVIRSSSPGRTTLARELIAKLE 264
           A L   +    G+   R  + + D  +N  +I   +  R    R ++A+L+
Sbjct: 388 ARLFQSVTNTQGQTDERGSMAVDDRTNN--IIAYQTQERLDELRRIVAQLD 436