Pairwise Alignments
Query, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45
Subject, 644 a.a., general secretion pathway protein D from Pseudomonas stutzeri RCH2
Score = 233 bits (593), Expect = 4e-65
Identities = 179/553 (32%), Positives = 278/553 (50%), Gaps = 60/553 (10%)
Query: 198 LDAEVVKLRNGVAVDIAGLATELLEGSGEKGRRDIVVLADPRSNSVVIRSSSPGRTTLAR 257
L+ V+++++ A ++ L L+ G LA S + +I S +
Sbjct: 132 LETRVIQVQHTSAAELIPLIRPLVPQFGH--------LAAVSSANALIISDRSANIARIQ 183
Query: 258 ELIAKLENAQSDPGNLHVVYLRNAQSVHLAGVLRG-LLTGESPDASGTGSGSVRAALGAG 316
L+ +L+ A+S+ + V+ L++ +V +A VLR L+ GE+ T +G A
Sbjct: 184 NLVRQLDRAESN--DYGVLNLQHGWAVDIAEVLRNSLMRGEAK----TTAGVQIIADSRT 237
Query: 317 GMLGGAGAANGTSGGAANASSANRGSTGGTGTGVSTMPSGGLRGVA---GGASAGGTGTQ 373
L G + A+ A + + +T T V + + +A G S G +
Sbjct: 238 NRLIFIGPSEARGKLASLAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKNPE 297
Query: 374 AGTSGNSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRRAQVLVESLI 433
+G + + + ++AD + N L++ A + ++ ++ LD RAQV+VE+ I
Sbjct: 298 SGEATTTRPQ-----NILIRADESLNALVLLADPELIGTMESIVRQLDVPRAQVMVEAAI 352
Query: 434 VEVTERDASELGIQWMAGGGNGRGVRAGTNFG------GATLNPNARNTI-EAMPRGLNI 486
VEV+ LG+QW RG G NFG G+ LN N I + +P G I
Sbjct: 353 VEVSGDITDALGVQWAVDARGSRGGAGGVNFGNTGISVGSVLNAINENEIPDNLPDGAII 412
Query: 487 GIVDGTVNLPGVGEILNLKMLARALQAKDGANILSTPNILTLDNEAASIMVGKTVPFVSG 546
GI GT + L AL + +N+LSTP++LTLDN+ A I+VG+ VPF +G
Sbjct: 413 GI--GTRSFGA---------LITALSSNSKSNLLSTPSLLTLDNQEAEILVGQNVPFQTG 461
Query: 547 QYITNGNSSTNPFQTIQREDIGLKLNIRPQISEGGTVKLDIYQEVSTIDTQAS---DISG 603
Y T+ + NPF TI+R+DIG+ L + P I+EG T++L I QE+S+I AS
Sbjct: 462 SYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATLRLQIEQEISSIAPSASLTAQAVD 521
Query: 604 IVTNKRALDTSILVDDGQIMVLGGLMEDSVANGTEAVPGLGALPVVGNLFRYDKRQRVKT 663
+VTNKRA+ ++IL +DGQ++VLGGL++D V VP LG +P++G LFR + +K
Sbjct: 522 LVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNAKVPLLGDIPLLGALFRSTQETHIKR 581
Query: 664 NLMVFLRPYVIRDANAGRGLTLDRYNFMRAQQGRARPVPHGLLPDVGGPALPPADLP--V 721
NLMVFLRP VIRD L+ +Y+ +R + D P + PA+
Sbjct: 582 NLMVFLRPTVIRDRAGLAALSGKKYSDIRV-----------IETDSASPTILPANPTQLF 630
Query: 722 SGR---APEVDLR 731
GR AP +DLR
Sbjct: 631 DGRGQPAPAIDLR 643
Score = 139 bits (349), Expect = 7e-37
Identities = 123/459 (26%), Positives = 207/459 (45%), Gaps = 56/459 (12%)
Query: 12 LACTTAGAATTAPVPTTAPAQAARAG--KDDKVVLNFVDADITSVVSALARFLGRNFLFD 69
L A + AP+P A Q + D +N DADI + + +++ G+ F+ D
Sbjct: 9 LLALLATSLLAAPLPLLAAEQGIEPSTTRQDGWTINLKDADIRAFIDQISQLSGQTFIVD 68
Query: 70 PRVKGQITLVSEGEVPAATAYGMLSTALRMRGFAIVDVGEVSRVVPVADAKLQGGSVNTR 129
PRVKGQ+++VS + + Y + + + GF+++ G+V+RVVP A+AK + G
Sbjct: 69 PRVKGQVSVVSNATLSLSEVYQLFLSVMATHGFSVLTQGDVARVVPNAEAKAEAGG---- 124
Query: 130 NPGGG--LATRTFRLNYENAEAMLPVLKPLIAAENSINAYPANNTLVVTDYIDNLERLAR 187
P GG L TR ++ + +A ++P+++PL+ + A + N L+++D N+ R+
Sbjct: 125 GPSGGDQLETRVIQVQHTSAAELIPLIRPLVPQFGHLAAVSSANALIISDRSANIARIQN 184
Query: 188 IIESIDTPTSLDAEVVKLRNGVAVDIAGLATELLEGSGEKGRRDIVVLADPRSNSVVIRS 247
++ +D S D V+ L++G AVDIA + L K + ++AD R+N ++
Sbjct: 185 LVRQLDRAESNDYGVLNLQHGWAVDIAEVLRNSLMRGEAKTTAGVQIIADSRTNRLIFIG 244
Query: 248 SSPGRTTLARELIAKLENAQSDPGNLHVVYLRNAQSVHLAGVL----RGLLTGESPDASG 303
S R LA L L+ + N V+ LR+ + LA L GL ES +A+
Sbjct: 245 PSEARGKLA-SLAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKNPESGEATT 303
Query: 304 TGSGS--VRA--ALGAGGMLGGAGAANGTSGGAANASSANRG---------STGGTGT-- 348
T + +RA +L A +L GT R G T
Sbjct: 304 TRPQNILIRADESLNALVLLADPELI-GTMESIVRQLDVPRAQVMVEAAIVEVSGDITDA 362
Query: 349 -GVS-TMPSGGLRGVAGGASAGGTGTQAGTSGNS-----------NGAAF-----SAGGV 390
GV + + G RG AGG + G TG G+ N+ +GA S G +
Sbjct: 363 LGVQWAVDARGSRGGAGGVNFGNTGISVGSVLNAINENEIPDNLPDGAIIGIGTRSFGAL 422
Query: 391 TVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRRAQVLV 429
+ + + +++ P + TLD + A++LV
Sbjct: 423 ITALSSNSKSNLLSTPSLL---------TLDNQEAEILV 452