Pairwise Alignments

Query, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  203 bits (517), Expect = 2e-56
 Identities = 132/381 (34%), Positives = 201/381 (52%), Gaps = 35/381 (9%)

Query: 358 LRGVAGGASAG-GTGTQAGTSGNSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRRV 416
           L+GV+    A  GTG    +  N          V + A A TN+L++ AP+ +  ++  V
Sbjct: 283 LKGVSENLQAEKGTGQPTTSKRNE---------VMIAAHADTNSLVLTAPQDIMNAMLEV 333

Query: 417 IDTLDQRRAQVLVESLIVEVTERDASELGIQW--MAGGGNGRGVRAGTNFGGATL----- 469
           I  LD RRAQVL+E+LIVE+ E D   LG+QW  +  G   +    G + G   +     
Sbjct: 334 IGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEA 393

Query: 470 ------------NPNARNTIEAMPRGLNIGIVDGTVNLPGVGEILNL---KMLARALQAK 514
                       N N         +G    +     ++ G    + +     L  A+   
Sbjct: 394 KDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSND 453

Query: 515 DGANILSTPNILTLDNEAASIMVGKTVPFVSGQYITNGNSSTNPFQTIQREDIGLKLNIR 574
             +NILS+P+I  +DN  AS +VG+ VP ++G   T G+++ NPFQT+ R+++G+KL + 
Sbjct: 454 SSSNILSSPSITVMDNGEASFIVGEEVPVITGS--TAGSNNDNPFQTVDRKEVGIKLKVV 511

Query: 575 PQISEGGTVKLDIYQEVSTIDTQASDISGIVTNKRALDTSILVDDGQIMVLGGLMEDSVA 634
           PQI+EG +V+L+I QEVS +   A+    +   KR L+TS++V DGQ++VLGGL+++   
Sbjct: 512 PQINEGNSVQLNIEQEVSNV-LGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERAL 570

Query: 635 NGTEAVPGLGALPVVGNLFRYDKRQRVKTNLMVFLRPYVIRDANAGRGLTLDRYNFMRAQ 694
                VP LG +P++G LFR    Q  K NLMVF++P +IRD     G+T  +YN++RA+
Sbjct: 571 ESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAE 630

Query: 695 QGRARPVPHGLLPDVGGPALP 715
           Q         LL D   P LP
Sbjct: 631 QLFRAEKGLRLLDDASVPVLP 651



 Score = 87.4 bits (215), Expect = 3e-21
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 10/258 (3%)

Query: 45  NFVDADITSVVSALARFLGRNFLFDPRVKGQITLVSEGEVPAATAYGMLSTALRMRGFAI 104
           +F   DI   ++ + R L +  + DP V+G++ + S   +     Y    + L + GFA+
Sbjct: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89

Query: 105 VDVGE-VSRVVPVADAKLQGGSV---NTRNPGGGLATRTFRLNYENAEAMLPVLKPLI-- 158
           V++   V +V+   DAK     V     R  G  + T+   +   +   + P+L+ LI  
Sbjct: 90  VEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDN 149

Query: 159 AAENSINAYPANNTLVVTDYIDNLERLARIIESIDTPTSLDAEVVKLRNGVAVDIAGLAT 218
           A   ++  Y   N +++T     + RLA II  +D     + EVV+L N  A ++  +  
Sbjct: 150 AGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVE 209

Query: 219 ELLEGSGEKGRRDIV---VLADPRSNSVVIRSSSPGRTTLARELIAKLENAQSDPGNLHV 275
            L + +  +   + +    +AD R+NS++I      R  L R LI +L+   +  GN  V
Sbjct: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKR-LIKQLDVEMAAKGNNRV 268

Query: 276 VYLRNAQSVHLAGVLRGL 293
           VYL+ A++  L  VL+G+
Sbjct: 269 VYLKYAKAEDLVEVLKGV 286