Pairwise Alignments

Query, 863 a.a., General secretion pathway protein D from Variovorax sp. SCN45

Subject, 687 a.a., type II secretion pathway protein D from Caulobacter crescentus NA1000

 Score =  323 bits (828), Expect = 2e-92
 Identities = 234/707 (33%), Positives = 349/707 (49%), Gaps = 102/707 (14%)

Query: 13  ACTTAGAATTAPVPTTAPAQAARAGKDDKVVLNFVDADITSVVSALARFLGRNFLFDPRV 72
           A    G A+  P P  A  Q          +LN  DADI   +  +A+  G  F+ DPRV
Sbjct: 16  AALVMGGASLGPAPVLAQTQ----------LLNVQDADIRVFIQDVAKSTGTTFIIDPRV 65

Query: 73  KGQITLVSEGEVPAATAYGMLSTALRMRGFAIVDVGEVS-RVVPVADAKLQGGSVNTRNP 131
           KG +T+ S G +     + +    LR   F     G  + R+ P  +A  Q  +      
Sbjct: 66  KGTVTVASNGPLNRRELFEVFLATLRANNFVATPAGNGAYRIEPSENAARQPSAA----- 120

Query: 132 GGGLATRTFRLNYENAEAMLPVLKPLIAAENSINAYPANNTLVVTDYIDNLERLARIIES 191
           GG  AT  FRL   +A + + +LKPL+  +  + A P    +VV DY DN+ R+  ++  
Sbjct: 121 GGQFATEVFRLRTLDAASAVEMLKPLVGPQGQVVANPRGAVVVVADYADNVRRIRGLLAQ 180

Query: 192 IDTPTSLDAEVVKLRNGVAVDIAGLATELLE---GSGEKGRRDIVVLADPRSNSVVIRSS 248
           +D   ++    V L +  A +IA +  ++L      G+ GR  + V+    SNSV++R  
Sbjct: 181 VDQDRAM-VHTVTLTHSSAREIAQVLNDMLATPGAEGKSGRGAVTVVPVDSSNSVLLRGD 239

Query: 249 SPGRTTLARELIAKLENAQSDPGNLHVVYLRNAQSVHLAGVLRGLLTGESPDASGTGSGS 308
           S     L   +IA L+       ++ VV+LR+A +  +  VL+ L+        G  + S
Sbjct: 240 SDAVQRLL-PVIADLDRRAESSDDVRVVFLRHANAEQMLPVLQQLV--------GQATTS 290

Query: 309 VRAALGAGGMLGGAGAANGTSGGAANASSANRGSTGGTGTGVSTMPSGGLRGVAGGASAG 368
           V  +               +S G +NA +A   ST       +T PS  +      A+  
Sbjct: 291 VTTS---------------SSRGLSNARTATGASTA------TTAPSAPV-----AATPS 324

Query: 369 GTGTQAGTSGNSNGAAFSAGGVTVQADATTNTLIIAAPEPMYRSLRRVIDTLDQRRAQVL 428
             G QA                T+      N LII AP    R+L  VI  LD RR QVL
Sbjct: 325 ANGPQA----------------TIARFPGANALIINAPPETQRTLAEVIRQLDVRREQVL 368

Query: 429 VESLIVEVTERDASELGIQWMAGGGNGRGVRAGTNFGGAT------LNPNARNTIEAMPR 482
           VE+++VEVT+  A +LG+Q++ GG NG      TN+  AT      +   A  T  A   
Sbjct: 369 VEAIVVEVTDGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLPLVGAAATTTSGADTE 428

Query: 483 GLNI-------------GIVDGTVNLPG---VGEILNLKMLARALQAKDGANILSTPNIL 526
            L               G+  G V   G    G I+N      A++   G+N+LSTP+I+
Sbjct: 429 ALKSLRDAAVSSLLTASGVTSGVVGRSGDALFGAIIN------AVKKDTGSNLLSTPSIM 482

Query: 527 TLDNEAASIMVGKTVPFVSGQYITNGNSSTNPFQTIQREDIGLKLNIRPQISEGGTVKLD 586
           TLDNE A I+VG+ VP  +G+ +  G+S+ NPF+TIQR+++G++L ++PQI+ GG + L 
Sbjct: 483 TLDNEEARILVGQEVPITTGEVL--GDSNANPFRTIQRQNVGIQLEVKPQINAGGGITLF 540

Query: 587 IYQEVSTIDTQAS-DISGIVTNKRALDTSILVDDGQIMVLGGLMEDSVANGTEAVPGLGA 645
           + QEVS++    S   S ++ NKR ++T+ LVDDG I+VLGGL++       +  PGLG 
Sbjct: 541 LRQEVSSVAGPVSVGSSELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQRTPGLGD 600

Query: 646 LPVVGNLFRYDKRQRVKTNLMVFLRPYVIRDANAGRGLTLDRYNFMR 692
           +P +G LFR   R+R KTNLMVF+RP +IR +   R LT  RY++MR
Sbjct: 601 VPGLGALFRSTARERKKTNLMVFIRPRIIRSSADARNLTAPRYDYMR 647