Pairwise Alignments

Query, 655 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 852 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  124 bits (310), Expect = 2e-32
 Identities = 129/435 (29%), Positives = 203/435 (46%), Gaps = 37/435 (8%)

Query: 223 DLLSGLPNRRALSEYLEILLK--RDQTQHVLLTFEVGNLKEMVRTLGHDWTDKFWGHLA- 279
           D L+GLPNR  L +YLE  L   R  +   LL  ++   K +  TLGH   D+    +A 
Sbjct: 434 DPLTGLPNRSRLRDYLEQNLASLRSGSTMTLLYIDLDRFKPVNDTLGHAAGDEVLMGVAS 493

Query: 280 --RELMRQESLKLTSNGKSKCFQLSDLALAFVVKETSVKQIENSQLMPRLYADITEHLQV 337
             RE  R   L     G             FVV   ++ ++   + + RL   I E L  
Sbjct: 494 RLRERTRDGDLVARLGGDE-----------FVV---ALHRMSEDEDIDRLCNRIIEALS- 538

Query: 338 AGGPYSSAQLRCGIT-NVRMA--GETNSSSVLRNISLALQSSNQQIRYFHDSFSAQADRD 394
           +   Y + Q+  G +  V +A    T ++ +LR   +AL  +    R    ++    D D
Sbjct: 539 SPFAYENHQISIGASIGVALAPMDATQANELLRCADIALYQAKDAGRGTWRAYGR--DMD 596

Query: 395 ADVHE-------LMIGWIRTVNPPMSYQPKFDLETRQICGAEALLRANSAEGISLSPLYV 447
             +HE       L +  I   +  + YQP++  +  +I GAEAL+R +      L P   
Sbjct: 597 QRLHERLRREEQLRVA-IAEQHLEVHYQPRYLSQGMRIIGAEALVRWHHPTHGLLLPEQF 655

Query: 448 LDVATRYQLLLKLEWCIVEMVIREIANCMASGFHMPLSVNISAASITVPGLGERILDRLS 507
           + +A    L++ L   +++   ++ A        M +SVN+S   +    L + I   L 
Sbjct: 656 IPLAEETGLIIPLGRWVLQQACQQAATWPVD---MVVSVNLSPLQLHDDRLLDEISQALH 712

Query: 508 RYSVPFELLSIEITESGHVPDMDTVRENVHRLHSAGVGLSLDDFGAGYSTLTTLAKIPFN 567
              +  E L +EITES  + +  +  + + R+ + GV L++DDFG GYS+LT+L   PF+
Sbjct: 713 ENGLAGERLELEITESALLQETQSTLDLLKRIKALGVHLAVDDFGTGYSSLTSLRHYPFD 772

Query: 568 EVKIDYAMVSMIEQPRMNKAIGLAL-ESATRYGATLVAEGVETEAQLAILIDMGIKFGQG 626
            +KID + V+ IEQ   + +I  AL E        + AEGVETE QL +L D G    QG
Sbjct: 773 VIKIDNSFVAGIEQSMEDHSIVRALIELGRGLQMRVTAEGVETEEQLRLLTDDGCTEVQG 832

Query: 627 FLLSKAVPMDDLIEL 641
           F +S  +P ++L  L
Sbjct: 833 FHMSLPMPAEELRRL 847