Pairwise Alignments

Query, 450 a.a., General secretion pathway protein E from Variovorax sp. SCN45

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  460 bits (1184), Expect = e-134
 Identities = 240/457 (52%), Positives = 326/457 (71%), Gaps = 20/457 (4%)

Query: 11  AVVEA-RLLLGELPLKQIASPEMDALLGATY----AETGDAASVVGAVEQQVDLDRLMQD 65
           A+VE  R++     L +++  E ++ L   Y    +E       +GA     D   L ++
Sbjct: 50  ALVETKRVVKHAFQLIELSQAEFESKLTQVYQRDSSEARQLMEDIGADSD--DFFSLAEE 107

Query: 66  IPAVTDLLDAQDDAPVIRMINALLAQAARDGASDIHLESFETHSVVRYRVDGTLRDVVAP 125
           +P   DLL+++DDAP+I++INA+L +A ++GASDIH+E+FE    +R+RVDG LR+V+AP
Sbjct: 108 LPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAP 167

Query: 126 RKALHAALISRIKIMSQLDIAEKRLPQDGRITLRVGGRPIDVRVSTVPTAHGERAVLRLL 185
            + L + L+SR+K+M++LDIAEKR+PQDGRI+LR+GGR +DVRVST+P++HGER V+RLL
Sbjct: 168 SRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLL 227

Query: 186 EKDAGRLRLERLGMAPDTLAELTRLVRQPHGIVLVTGPTGSGKTTTLYAALGQLDLSTSN 245
           +K+A RL L  LGM         RL+++PHGI+LVTGPTGSGK+TTLYA L +L+ S  N
Sbjct: 228 DKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 287

Query: 246 ILTVEDPVEYDLPGIGQIPVHGKIGMTFGAALRAALRQDPDNIMIGEIRDLETAQIAVQS 305
           ILTVEDP+E+D+ GIGQ  V+ ++ MTF   LRA LRQDPD +M+GEIRDLETAQIAVQ+
Sbjct: 288 ILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQA 347

Query: 306 SLTGHGVLASLHTNDAVSAVTRMTDMGIEPFLLSSSLLGVLAQRLVRCLCPACKAP---- 361
           SLTGH V+++LHTN AV AVTR+ DMGIEPFL+SSSLLGVLAQRLVR LCP CK P    
Sbjct: 348 SLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEAD 407

Query: 362 --------QTRPDGSVVYGPVGCAACGHSGFKGRTGIHELFVVHDDVRRLIHEGGDEQAM 413
                     + +  ++Y   GC  C H G++GRTGIHEL +V D ++ LIH    EQAM
Sbjct: 408 KEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAM 467

Query: 414 RAAAAKRGMRSMREDGQRWVREGITTAEEILRVTRDA 450
                +    S+R+DG   VR+GIT+ EE++RVT+++
Sbjct: 468 E-KHIRATTPSIRDDGLDKVRQGITSLEEVMRVTKES 503