Pairwise Alignments

Query, 401 a.a., General secretion pathway protein F from Variovorax sp. SCN45

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  282 bits (721), Expect = 1e-80
 Identities = 157/405 (38%), Positives = 246/405 (60%), Gaps = 6/405 (1%)

Query: 1   MARFEYEAASASGELQRGTTEGESARSVRAQLRDRGLTPLDIRE---KAAGGGALSWLSP 57
           MA FEY+A  A G  ++G  EG++AR VR +L+++ L P+++ E   KAA   +  +   
Sbjct: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60

Query: 58  R-LGAADLCWATRELASLLGARLTLEAALVATIEQAERKHVAESLSAVCDSVRAGMRLAD 116
           R +   DL   TR+LA+L+ + + LE  L A  EQ+E+  +   L AV   V  G  L+D
Sbjct: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120

Query: 117 ALGERPRDFPQIYRALVSAGEDSGDLARVMERLADYLENRDNLRGKVLTAFIYPAIVGFV 176
           +LG+ P  F +++R++V+AGE SG L  V+ERLADY ENR  +R K+  A IYP ++   
Sbjct: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180

Query: 177 SLCIVVFLLGYVVPQVIGAFAQARQELPTITRVMLAASAFVREWG-WLTAGVVVAAWVAA 235
           ++ IV FLL  VVP+++G F Q  Q LP  T+ +L AS F++ WG  L  G+++  ++  
Sbjct: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL-V 239

Query: 236 RALLRDAAHKLKWHGLILRMPMVGRFALGVDTARFASTLSILMDAGVPLLRALEAARQTL 295
           R LL     +L+W   ++ +P++G+ A G++TARFA TLSI   + +P+L  +  A   +
Sbjct: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299

Query: 296 VNEWLKRCVLEATGRVKEGTPLAAALKAQKIFPSNLVHLVASGEKTGALAAMFERAALNL 355
            N+++K+ VL A   V+EG+ L  AL+  K+FP  ++H++ASGE++G L  M  RAA N 
Sbjct: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359

Query: 356 SRDLERRAMRLTTLLEPLMILAMGGVVMAIVLAVLMPIMEINQMV 400
               E        +  P +I  M G+V+ IV+A LMPI+E+N ++
Sbjct: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404