Pairwise Alignments

Query, 401 a.a., General secretion pathway protein F from Variovorax sp. SCN45

Subject, 340 a.a., toxin coregulated pilus biosynthesis protein E from Vibrio cholerae E7946 ATCC 55056

 Score = 50.8 bits (120), Expect = 6e-11
 Identities = 49/295 (16%), Positives = 122/295 (41%), Gaps = 8/295 (2%)

Query: 95  KHVAESLSAVCDSVRAGMRLADALGERPRDFPQIYRALVSAGEDSGDLARVMERLADYLE 154
           K+  +S+  + D +++   L DAL       P     +++  E+SG ++  +  +   + 
Sbjct: 43  KNFIKSIELIKDRMKSNSSLTDALTGL---IPDKEVLMINVAENSGKISSGIAAIRKNII 99

Query: 155 NRDNLRGKVLTAFIYPAIVGFVSLCIVVFLLGYVVPQVIGAFAQARQELPTITRVMLAAS 214
           + D ++ K +++ I P+++  V++ ++      V P        +R   P +T+ +    
Sbjct: 100 DADEIKSKAISSMITPSVMLIVTMVVIAGYSVKVFPTFESVLPVSR--WPGVTQALYNLG 157

Query: 215 AFVREWGWLTAGVVVAAWVAARALLRDAAHKLKWHGLILRMPMVGRFALGVDTARFASTL 274
             + E  W+   + VA ++     +          G + ++P    F   +    F + +
Sbjct: 158 FSLYEGLWIKVLIFVAIFITILVFMSKNITGNFRDGFLDKLPPF-NFVKHIAATEFLANM 216

Query: 275 SILMDAGVPLLRALEAARQTLVNEWLKRCVLEATGRVKEGTPLAAALKAQKIFPSNLVHL 334
           S+L+D+ VP    L+         WL   +      ++EG     AL    +    L+ +
Sbjct: 217 SMLLDSRVPFKEGLDIVDHK-TTRWLSSHLQRMKANMQEGLDYKQALDTNLLDKKMLLTM 275

Query: 335 VASGEKTGALAAMFERAALNLSRDLERRAMRLTTLLEPLMILAMGGVVMAIVLAV 389
               E     + + ++ A+  + +L ++   L  +++ + ++ +   V+ I  A+
Sbjct: 276 AVYSELPN-FSDVMQKLAIEANINLHKKIATLAGVMKNISLITLALSVIWIFGAI 329