Pairwise Alignments

Query, 236 a.a., ABC-type antimicrobial peptide transport system, ATPase component from Variovorax sp. SCN45

Subject, 233 a.a., lipoprotein releasing system, ATP-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (471), Expect = 4e-52
 Identities = 96/233 (41%), Positives = 151/233 (64%), Gaps = 2/233 (0%)

Query: 1   MSQPPSDAIVAVEHVFKSVTDSAGTLDILQDIHFTLGARETAAIVGASGSGKSTLLSIIA 60
           M+Q  +  ++ V +V K   + +    +L  ++ ++   E  AI+G+SGSGKSTLL I+ 
Sbjct: 1   MTQQDNSLLLQVSNVSKRYHEGSIDTQVLSGVNLSIAKGEQVAIIGSSGSGKSTLLHIMG 60

Query: 61  GLDTPTRGTVRLAGDDLFAIDEDERAAVRAQRVGFVFQSFQLLGNLSALENVMLP--LEL 118
            LD P+ G V   G+DL+ +    +AA+R Q +GF++Q   LL   +ALENV +P  ++ 
Sbjct: 61  TLDKPSSGQVMFDGEDLYQLSPSRQAAIRNQELGFIYQFHHLLPEFTALENVAMPGLIQK 120

Query: 119 ANRKDARKAATEMLGRVGLGQRLGHYPKVLSGGEQQRVALARAFVVQPALLLADEPTGSL 178
             R++  + A E+L RVGLG RL H P  +SGGE+QR A+ARA + +P L+LADEPTG+L
Sbjct: 121 RPRQEVEQEAKELLSRVGLGHRLHHTPAEMSGGERQRTAIARALINRPKLVLADEPTGNL 180

Query: 179 DFATGEQVMKLMFDLNRELGTTLVLVTHDRGIADRCERRITIEAGRVAGNEKA 231
           D A+G+ V +L+ +L  +LGT  V+VTHD  +A R +R++ ++ G+++  E A
Sbjct: 181 DAASGDSVYELIRELGSQLGTAFVVVTHDPKLAARMDRQLKMQDGQLSAWEMA 233