Pairwise Alignments

Query, 384 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family from Variovorax sp. SCN45

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  106 bits (265), Expect = 9e-28
 Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 17/319 (5%)

Query: 66  LRVATVGEQASPHDVSLPATVEANPASTVNVLPPLTGKLAELKVRLGDTVKRGQVLATMT 125
           + V T   Q+     SL    +     +V++   + GK+  + V+    VK+GQ+L  + 
Sbjct: 32  ISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLD 91

Query: 126 SPDLAQAVSDAQKARDALDLAQRALVRARGVNEAGSNAAKDVEAAQSAVAQQTAELRRSE 185
             D AQA     KA   L   QR L     + +  +    +++A ++ V    A L  ++
Sbjct: 92  D-DKAQAALVEAKAY--LQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQ 148

Query: 186 TRLRSLGADGSGAQAGQLLKIVAPISGTVTALNAAAGANLNDATATLMTVANLDSVWVTV 245
             L  L              I AP  GTV  ++ + G  ++ A + L+T+ NL  + + +
Sbjct: 149 ANLADL-------------HITAPFDGTVGFIDFSRGKWVS-AGSELLTLDNLSLMRLDL 194

Query: 246 NVPENVVGAVAPGQNVTVSLAAFPGRRFTGKVGFVSAVLEADTRRAKARIVFANPEGLFK 305
            +PE  +  ++ G  V  S  A+P  +F G V  V + +  +T   + R+ F NP+   K
Sbjct: 195 QIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLK 254

Query: 306 PNMYATAVLGVPQAAQPQVPASALLMNNDAVSVFVEAEPWTFVRRMVELGREDGDQVRIR 365
           P M  +A +  P  + P +P  AL  +     V+V  E     RR V LG    +QV I 
Sbjct: 255 PGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIE 314

Query: 366 SGLNAGERVVVRGGVLLND 384
            GL  GE++VV+G V + D
Sbjct: 315 KGLQIGEKIVVQGIVNMRD 333