Pairwise Alignments

Query, 629 a.a., phage integrase family protein from Variovorax sp. OAS795

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 34/234 (14%)

Query: 391 NYLVSNPFSTLAPPSSLQQPLDSRRALSFAQWDHVDALL-QAHADTEARRRLRRGMRWLY 449
           NYL+     +  P + ++ P  SR          VD LL + + D     R +  +  LY
Sbjct: 87  NYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLY 146

Query: 450 ATGLRLAEITGAKCEDLEQVEHRTGDGWQLAVSGKGGRIRHVPVPSALVAELEDEL--AR 507
           ATGLR++E+ G     +EQ+  R G    + + GKGG+ R VP+    + E+E  L  AR
Sbjct: 147 ATGLRVSELVGL---TMEQMSLRQG---LVRIIGKGGKERLVPMGEMAITEVEHYLTSAR 200

Query: 508 HGFERQVGAVSNRGIHVLARFDTASRRPAAWSASGLYQAIKAFVAQAAASLECAEAADQL 567
           H     +G       H+ +     S+R    +    +  IK + ++A    E        
Sbjct: 201 H---ELLG-------HIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-------- 242

Query: 568 KKASTHWLRHSHGAHALQGRQGQVPVPIQVVQNNLGHASVGTTAMYLTTDRTPL 621
              S H LRH+   H L          ++VVQ  LGH+ + TT +Y    R  L
Sbjct: 243 --LSPHTLRHAFATHLLNH-----GADLRVVQLLLGHSDLSTTQIYTHVARARL 289