Pairwise Alignments

Query, 1053 a.a., efflux RND transporter permease subunit from Variovorax sp. OAS795

Subject, 1054 a.a., multidrug transporter from Pseudomonas fluorescens FW300-N2C3

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 570/1047 (54%), Positives = 758/1047 (72%), Gaps = 13/1047 (1%)

Query: 1    MAKFFIDRPIFAWVIALFVLVMGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            M+KFFIDRPIFAWVIAL ++++G ++I +LPI+QYP +APPAI I V YPGASAQT++D+
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIQVTYPGASAQTVQDT 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGSGTITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V+ VIE+++NG   L Y+ S + +DGS TIT +FE GTN D AQV VQN+L+ ATP LP 
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120

Query: 121  AVTQQGVRVDKARNNFLMFVMLSSDNPAFDPVALGDYTARNIVPELQRVIGVGQAQLFGS 180
             V QQG+RV K+  NFLM + + S + +     L +Y   N+   + R  GVG  Q+FG+
Sbjct: 121  EVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 181  ENAMRIWIDPAKLQGYALSATDVNNAIRAQNAQVSSGTLGDLPNIPGQAIAATVVVNGQL 240
            + AMRIW+DPAKL  + L+  DV+ AI AQN Q++SG LG LP +PGQ + AT++   +L
Sbjct: 181  QYAMRIWLDPAKLNNFNLTPVDVSTAISAQNVQIASGQLGGLPAMPGQQLNATIIGKTRL 240

Query: 241  ANVEQFKNIVLRANTNGSTVRLKDVARVELGGQSYATSARLNGVPAVGIGVQPTPNGNAL 300
               EQFK I+L+ N +GS VR+ DVA V LGG++Y+ +A+ NG+PA G+ V+     NAL
Sbjct: 241  QTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINAQFNGLPASGLAVRLATGANAL 300

Query: 301  QSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360
             +AKA+R  + +L+ FFP G++   PYD++  V  SI  VV+TL+EAV LVF+VMFLFLQ
Sbjct: 301  DTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQ 360

Query: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420
            N+R TII T+ VP+ LLGTF  L A GFSIN LTMFGMVL IG++VDDAIVVVENVER+M
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMVTSIAF 480
            SEEGLSP EAT+K+M QI GA++G+ +VL +V +P+AFF GSTG IY+QFS  +V+++A 
Sbjct: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480

Query: 481  SAFMALSLTPALCATLLKPVEAGHH-HEKRGFFGWFNRGFTRTAKGYESVVARILKRAAR 539
            S  +AL  TPALCAT+LK +  G H   KRGFFGWFNR F R  + YE  V  +LK  A 
Sbjct: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVRSYERGVGNMLKHKAP 540

Query: 540  YLVIYAVIIGAVVFTYMRLPSSFLPAEDQGNIIVNVQLPPGATQERALSVMQQVEGFILK 599
            YL+ Y +I+  +V+ + R+P++FLP EDQG +   VQ P G++ ER   V+  +  F+L+
Sbjct: 541  YLLAYVIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDNMREFLLR 600

Query: 600  QPE-------VQSMVGVMGFSFSGQGQNAGLAFVTLKDWEERKDPAHSASALAGRAFGAL 652
              +       V S+  V GF+F+G+GQ++GLAF+ LK WEER +  ++   +AGRA    
Sbjct: 601  PSKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPWEER-NADNTVFKIAGRAQQHF 659

Query: 653  SGIRDAFIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMAGQSKILAQV 712
               RDA ++  +PP + ELGNA+GF   LQDR+G GH+ L+ ARNQ LGMA QSK+LAQV
Sbjct: 660  FTFRDAMVFAFAPPAVMELGNATGFDVFLQDRAGIGHDKLMEARNQFLGMASQSKVLAQV 719

Query: 713  RPDGLEDAPQLQIDIDRDKANALGVSFDAINATLSTGLGSSYINDFPNRGRLQRVMVQAD 772
            RP+GL D PQ Q++ID +KA+ALG++   IN TLS  LGS+Y+NDF +RGR++RV VQ  
Sbjct: 720  RPNGLNDEPQYQLEIDDEKASALGITLSEINNTLSIALGSNYVNDFIDRGRVKRVYVQGQ 779

Query: 773  APARMQPDDLLRLNASNSQGQPVPLSAFATTRWVKGATQTVRYNGYPAIRISGDAAPGFS 832
              +RM P+DL +    NS G  VP SAFA   WV G+ +  RYNG  A+ I G  APG+S
Sbjct: 780  PNSRMSPEDLQKWYVRNSAGTMVPFSAFAKGEWVYGSPKLARYNGVEAMEILGTPAPGYS 839

Query: 833  TGAAMAEMEKLARQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWT 892
            TG AMAE+E +A++LP G G  WTG S EE+L+GSQA  LY  ++L VFLCLAALYESW+
Sbjct: 840  TGEAMAEVEAIAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWS 899

Query: 893  IPLAVILVVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQG 952
            IP+AV+LVVPLG++G L+AT LR  SNDVYFQVGL+T IGL+AKNAILI+EFAK+L  QG
Sbjct: 900  IPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQG 959

Query: 953  KGIIESALAAAHLRFRPIVMTSLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGTAL 1012
            + ++E+A+ A  +R RPI+MTSLAF LGVVPL +++GAGS SQ AIGTGV+GGM+T T L
Sbjct: 960  RTLVEAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMLTATIL 1019

Query: 1013 AVIFVPVFFVVVRTLFKGSARQHEADK 1039
            A+ +VP+FFV V ++     R+  AD+
Sbjct: 1020 AIFWVPLFFVTVSSI----GRRKNADQ 1042