Pairwise Alignments

Query, 1053 a.a., efflux RND transporter permease subunit from Variovorax sp. OAS795

Subject, 1032 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

 Score = 1224 bits (3167), Expect = 0.0
 Identities = 627/1029 (60%), Positives = 788/1029 (76%), Gaps = 3/1029 (0%)

Query: 1    MAKFFIDRPIFAWVIALFVLVMGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            M +FFIDRP+FAWVIALF+L+ G +AI QLP++QYP VAPP + I   YPGASAQT+++S
Sbjct: 1    MPQFFIDRPVFAWVIALFILLAGALAIVQLPVAQYPNVAPPKVEIYATYPGASAQTVDES 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGSGTITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V+S+IE E+NG+  L+Y ES +   GS TIT +F+ GT+ ++AQVDVQNRL     RLP 
Sbjct: 61   VVSLIEEELNGADHLLYFESQSSL-GSATITATFQPGTDPEMAQVDVQNRLKVVESRLPQ 119

Query: 121  AVTQQGVRVDKARNNFLMFVMLSSDNPAFDPVALGDYTARNIVPELQRVIGVGQAQLFGS 180
            AVTQQG++V+K    FL+ + L+S +   D VAL DY ARN++ E++R+ GVG+AQL+G+
Sbjct: 120  AVTQQGLQVEKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGA 179

Query: 181  ENAMRIWIDPAKLQGYALSATDVNNAIRAQNAQVSSGTLGDLPNIPGQAIAATVVVNGQL 240
            E AMRIWIDP KL G+ L+  DVN AI AQNAQVS+G++GDLP    Q I AT++V GQL
Sbjct: 180  ERAMRIWIDPRKLIGFNLTPADVNAAIVAQNAQVSAGSIGDLPTRTTQEITATILVKGQL 239

Query: 241  ANVEQFKNIVLRANTNGSTVRLKDVARVELGGQSYATSARLNGVPAVGIGVQPTPNGNAL 300
            +  E+F +IVL+A+ +GSTVR+ DVARVE+G Q Y  S RLNG P+  + VQ +P  NAL
Sbjct: 240  STPEEFADIVLKADPDGSTVRIGDVARVEIGSQEYQFSTRLNGKPSTAVSVQLSPGANAL 299

Query: 301  QSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360
             +A  +RAKM EL R+FP GV++ IPYD+S FV++SIT+VV TL+EA+ LVF VMFLFLQ
Sbjct: 300  STATLVRAKMDELARYFPAGVEYKIPYDTSPFVKVSITKVVYTLIEAMVLVFAVMFLFLQ 359

Query: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420
            N RYT+IPT+VVP+AL+GTFA++LALGFSINVLTMFGMVL IGI+VDDAIVVVENVERIM
Sbjct: 360  NIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 419

Query: 421  SEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMVTSIAF 480
            + EGLSP EATRKAMKQI+GAIIG+T+VL++VF+P+AF  GS G IY+QFS  M TSI F
Sbjct: 420  ATEGLSPKEATRKAMKQITGAIIGITLVLVAVFIPMAFMQGSVGVIYQQFSLSMATSILF 479

Query: 481  SAFMALSLTPALCATLLKPVEAGHHHEKRGFFGWFNRGFTRTAKGYESVVARILKRAARY 540
            SAF+AL+LTPALCATLLKP+  G HH K GFFGWFNR F +  + Y+  VA  LKR  RY
Sbjct: 480  SAFLALTLTPALCATLLKPIAKGEHHAKGGFFGWFNRRFEQLTERYQGWVAYALKRTGRY 539

Query: 541  LVIYAVIIGAVVFTYMRLPSSFLPAEDQGNIIVNVQLPPGATQERALSVMQQVEGFILKQ 600
            L+IY V++  +   + RLPSSFLP EDQG  I ++QLPPGA++ R + V++Q+E     +
Sbjct: 540  LLIYGVLLIGLGLCFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTVQVVEQIEAHNATE 599

Query: 601  PEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWEERKDPAHSASALAGRAFGALSGIRDAFI 660
            P V     ++GFSFSG GQNA LAF TLKDW +R     SAS++A RA  ALS I+DA  
Sbjct: 600  PGVGDSTVILGFSFSGSGQNAALAFTTLKDWSDRGSD-DSASSIADRANIALSQIKDAMA 658

Query: 661  YPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMAGQSKILAQVRPDGLEDA 720
            + + PPP+  LG +SGF FRLQDR G GH  L+ AR+QLL  A +S +L  VR   L +A
Sbjct: 659  FAVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSQLLAAAEKSPVLMNVRESALAEA 718

Query: 721  PQLQIDIDRDKANALGVSFDAINATLSTGLGSSYINDFPNRGRLQRVMVQADAPARMQPD 780
            PQ+Q+++DR +ANALG+SF  I   LST +GS+YINDFPN+GR+QRV+VQA+   R Q D
Sbjct: 719  PQVQLEVDRKQANALGISFADIGNVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQVD 778

Query: 781  DLLRLNASNSQGQPVPLSAFATTRWVKGATQTVRYNGYPAIRISGDAAPGFSTGAAMAEM 840
            DLL+++  N+    VPLSAF    W +G  Q  RYNGYPAI ISG+ APG+STG AMAE+
Sbjct: 779  DLLKIHVRNNGENMVPLSAFVRANWTQGPAQLTRYNGYPAISISGEPAPGYSTGEAMAEI 838

Query: 841  EKLARQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWTIPLAVILV 900
            E+L  Q P G G EWTG S +E+L+GSQA +L G ++L VFLCLAALYESW+IP +V+LV
Sbjct: 839  ERLVAQGPAGLGQEWTGLSLQERLSGSQAPILLGLSLLIVFLCLAALYESWSIPTSVLLV 898

Query: 901  VPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQGKGIIESAL 960
            VPLGVLG +LA  LR   NDV+F+VGLITIIGLSAKNAILIIEFAK L  +G  +I++ L
Sbjct: 899  VPLGVLGAVLAVTLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDATL 958

Query: 961  AAAHLRFRPIVMTSLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGTALAVIFVPVF 1020
             AA LR RPIVMTSLAF LGVVPL +A+GA SASQ+AIGTGV+GGM+T T LAV+FVPVF
Sbjct: 959  QAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITAT-LAVVFVPVF 1017

Query: 1021 FVVVRTLFK 1029
            FVVV  L +
Sbjct: 1018 FVVVMKLVR 1026