Pairwise Alignments

Query, 1053 a.a., efflux RND transporter permease subunit from Variovorax sp. OAS795

Subject, 1071 a.a., multidrug efflux RND transporter permease subunit from Cupriavidus basilensis FW507-4G11

 Score = 1119 bits (2894), Expect = 0.0
 Identities = 560/1027 (54%), Positives = 747/1027 (72%), Gaps = 3/1027 (0%)

Query: 1    MAKFFIDRPIFAWVIALFVLVMGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            MAKFFIDRPIFAWVIA+ +++ G  A T LPI+QYP +APPA+ I+  YPGASA+T+ED+
Sbjct: 1    MAKFFIDRPIFAWVIAIILMLAGLAATTTLPIAQYPTIAPPAVQISATYPGASAKTVEDT 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGSGTITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V  VIE++M+G   L+Y+ S +   G+ TIT++F AGTN D+AQV VQN+L  ATP LP 
Sbjct: 61   VTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  AVTQQGVRVDKARNNFLMFVMLSSDNPAFDPVALGDYTARNIVPELQRVIGVGQAQLFGS 180
            AV Q G +V K+ ++FL+ +   S + +     L +Y A  ++  + R+ GVG   LFGS
Sbjct: 121  AVQQLGTKVTKSSSSFLLILAFVSKDGSMGRYDLANYVASKVLDPVSRIDGVGTVTLFGS 180

Query: 181  ENAMRIWIDPAKLQGYALSATDVNNAIRAQNAQVSSGTLGDLPNIPGQAIAATVVVNGQL 240
            + AMRIW+D +KL  Y+L+  DV +A+ AQN QV+ G+LG  P++PGQ + AT+     L
Sbjct: 181  QYAMRIWLDASKLNNYSLTPIDVKSAVAAQNVQVAGGSLGGTPSVPGQMLQATITEATLL 240

Query: 241  ANVEQFKNIVLRANTNGSTVRLKDVARVELGGQSYATSARLNGVPAVGIGVQPTPNGNAL 300
                QF NI+L+ NT+GS VRL+DVAR+ELGG++Y    + NG P    G+Q     NAL
Sbjct: 241  QTPAQFGNILLKVNTDGSQVRLRDVARIELGGENYNFDTKYNGQPTAAFGIQLATGANAL 300

Query: 301  QSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360
             +AKA+RAKMA+L+R+ P GV  + PYD + F+ +SI EV+KTL+E + LVF+VM+LFLQ
Sbjct: 301  ATAKAVRAKMADLQRYAPQGVVVEYPYDITPFITLSIEEVIKTLIEGIVLVFLVMYLFLQ 360

Query: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420
            N R T+IPTI VP+ LLGTFA +  +GFSIN L+MFGMVL IG++VDDAIVVVENVER+M
Sbjct: 361  NLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMVTSIAF 480
            +EEGLSP +ATRKAM+QI+GA++GV +VL +VFVP+AF  GS G IYRQFS  +V ++  
Sbjct: 421  AEEGLSPRDATRKAMEQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVL 480

Query: 481  SAFMALSLTPALCATLLKPVEAGHHHEKRGFFGWFNRGFTRTAKGYESVVARILKRAARY 540
            S  +AL LTPALCAT+L+P+  GHH EK GFFGWFNR F R+ K Y   V  +++R+ R+
Sbjct: 481  SVLVALILTPALCATMLEPIPKGHHDEKTGFFGWFNRTFARSQKKYHGGVEHVIRRSGRW 540

Query: 541  LVIYAVIIGAVVFTYMRLPSSFLPAEDQGNIIVNVQLPPGATQERALSVMQQVEGFIL-- 598
            L+IY ++I  V   ++RLP +FLP EDQG + V VQ P G+TQER   V+  V+ ++L  
Sbjct: 541  LIIYLMVILVVGLLFVRLPKAFLPEEDQGTMFVLVQAPVGSTQERTAKVLLDVQEYLLNS 600

Query: 599  KQPEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWEERKDPAHSASALAGRAFGALSGIRDA 658
            ++  V++++ V GFSF+G+GQN+GL FV LKD+ +R+     A AL  R FG  +G +DA
Sbjct: 601  EKESVEAVLTVNGFSFAGRGQNSGLVFVRLKDFSQRESANLKAPALVRRIFGHFAGYKDA 660

Query: 659  FIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMAGQSKILAQVRPDGLE 718
             ++PL+PP IPELG A+GF F LQDR+G GHE L+ ARN LLGMA +  +LAQVRP+GL 
Sbjct: 661  NVFPLNPPSIPELGTAAGFDFELQDRAGLGHEKLMQARNMLLGMAAKDALLAQVRPNGLN 720

Query: 719  DAPQLQIDIDRDKANALGVSFDAINATLSTGLGSSYINDF-PNRGRLQRVMVQADAPARM 777
            D PQ ++DIDR+KANALGVS   I+ T ST   S Y+N+F     R+++V VQ +   RM
Sbjct: 721  DTPQFKVDIDREKANALGVSAADIDQTFSTAWASLYVNNFLDTDNRIKKVYVQGEPRFRM 780

Query: 778  QPDDLLRLNASNSQGQPVPLSAFATTRWVKGATQTVRYNGYPAIRISGDAAPGFSTGAAM 837
             P+DL      N+ G  VP  AF +  W+ G+ +  R+NG PA+ I G AA G STG AM
Sbjct: 781  NPEDLNAWYVRNAAGTMVPFGAFGSGAWIFGSPKLERFNGIPAVEIQGSAAAGKSTGQAM 840

Query: 838  AEMEKLARQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWTIPLAV 897
              ME +A++LP G G+EWTG S +E+ +GSQA +LYG +IL VFLCLAALYESW+IP +V
Sbjct: 841  NAMEAIAQKLPDGIGYEWTGLSYQERQSGSQAPLLYGISILVVFLCLAALYESWSIPFSV 900

Query: 898  ILVVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQGKGIIE 957
            I+VVPLG+LG LLA  LR   NDV+FQVGL+T +GLSAKNAILI+EFA+DL+ QG   ++
Sbjct: 901  IMVVPLGILGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARDLRDQGMSNVD 960

Query: 958  SALAAAHLRFRPIVMTSLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGTALAVIFV 1017
            +A+ AA LR RPI+MTSLAF LGV+PL L++GAGS SQ AIGTGV+GGM+T T LA+  +
Sbjct: 961  AAVEAARLRLRPILMTSLAFILGVLPLALSNGAGSGSQHAIGTGVIGGMLTATFLAIFMI 1020

Query: 1018 PVFFVVV 1024
            P+FFVV+
Sbjct: 1021 PMFFVVI 1027



 Score = 57.8 bits (138), Expect = 4e-12
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 280  RLNGVPAV---GIGVQPTPNGNALQSAKAIRAKMAELERFFPPGVKWDIPYDSSRFVQIS 336
            R NG+PAV   G        G A+ + +AI  K+       P G+ ++    S +  Q S
Sbjct: 817  RFNGIPAVEIQGSAAAGKSTGQAMNAMEAIAQKL-------PDGIGYEWTGLSYQERQ-S 868

Query: 337  ITEVVKTLLEAVALVFVVMFLFLQNWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMF 396
             ++       ++ +VF+ +    ++W       +VVP+ +LG   +    G   +V    
Sbjct: 869  GSQAPLLYGISILVVFLCLAALYESWSIPFSVIMVVPLGILGALLAATLRGLENDVFFQV 928

Query: 397  GMVLVIGIVVDDAIVVVENVERIMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPL 456
            G++  +G+   +AI++VE   R + ++G+S ++A  +A +     I+  ++  I   +PL
Sbjct: 929  GLLTTVGLSAKNAILIVE-FARDLRDQGMSNVDAAVEAARLRLRPILMTSLAFILGVLPL 987

Query: 457  AFFAGSTGNIYRQFSAVMVTSIAFSAFMALSLTPALCATLLKPVEAGH 504
            A   G+           ++  +  + F+A+ + P     + K  +  H
Sbjct: 988  ALSNGAGSGSQHAIGTGVIGGMLTATFLAIFMIPMFFVVIGKFSKTRH 1035